Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
RFX3P48380 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RFX3P48380 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RFX3P48380 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RFX3P48380 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RFX3P48380 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC15.27■□□□□ 0.03
RFX3P48380 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.26■□□□□ 0.03
RFX3P48380 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RFX3P48380 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFX3P48380 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFX3P48380 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFX3P48380 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
RFX3P48380 AC005622.1-201ENST00000636801 1703 ntBASIC15.26■□□□□ 0.03
RFX3P48380 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
RFX3P48380 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
RFX3P48380 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
RFX3P48380 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RFX3P48380 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
RFX3P48380 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFX3P48380 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RFX3P48380 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RFX3P48380 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
RFX3P48380 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
RFX3P48380 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.26■□□□□ 0.03
RFX3P48380 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFX3P48380 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFX3P48380 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.26■□□□□ 0.03
RFX3P48380 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC15.26■□□□□ 0.03
RFX3P48380 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.26■□□□□ 0.03
RFX3P48380 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
RFX3P48380 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
RFX3P48380 AC109635.5-201ENST00000533593 962 ntBASIC15.26■□□□□ 0.03
RFX3P48380 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC15.26■□□□□ 0.03
RFX3P48380 MIR3909-201ENST00000579518 119 ntBASIC15.26■□□□□ 0.03
RFX3P48380 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.26■□□□□ 0.03
RFX3P48380 AL161645.1-201ENST00000622716 1255 ntBASIC15.26■□□□□ 0.03
RFX3P48380 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFX3P48380 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFX3P48380 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFX3P48380 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC15.26■□□□□ 0.03
RFX3P48380 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC15.26■□□□□ 0.03
RFX3P48380 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFX3P48380 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
RFX3P48380 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFX3P48380 PCDHA3-202ENST00000532566 4594 ntBASIC15.26■□□□□ 0.03
RFX3P48380 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.25■□□□□ 0.03
RFX3P48380 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
RFX3P48380 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
RFX3P48380 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RFX3P48380 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RFX3P48380 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFX3P48380 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RFX3P48380 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFX3P48380 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RFX3P48380 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.25■□□□□ 0.03
RFX3P48380 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
RFX3P48380 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFX3P48380 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RFX3P48380 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RFX3P48380 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC15.25■□□□□ 0.03
RFX3P48380 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
RFX3P48380 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
RFX3P48380 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
RFX3P48380 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFX3P48380 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFX3P48380 AC092474.2-201ENST00000424288 719 ntBASIC15.25■□□□□ 0.03
RFX3P48380 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RFX3P48380 PGAM5P1-201ENST00000518923 814 ntBASIC15.25■□□□□ 0.03
RFX3P48380 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.25■□□□□ 0.03
RFX3P48380 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.25■□□□□ 0.03
RFX3P48380 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.25■□□□□ 0.03
RFX3P48380 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC15.25■□□□□ 0.03
RFX3P48380 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC15.25■□□□□ 0.03
RFX3P48380 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC15.25■□□□□ 0.03
RFX3P48380 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC15.25■□□□□ 0.03
RFX3P48380 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
RFX3P48380 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC15.25■□□□□ 0.03
RFX3P48380 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
RFX3P48380 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC15.25■□□□□ 0.03
RFX3P48380 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
RFX3P48380 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC15.25■□□□□ 0.03
RFX3P48380 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RFX3P48380 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC15.25■□□□□ 0.03
RFX3P48380 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15.25■□□□□ 0.03
RFX3P48380 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFX3P48380 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.25■□□□□ 0.03
RFX3P48380 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC15.25■□□□□ 0.03
RFX3P48380 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFX3P48380 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFX3P48380 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
RFX3P48380 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
RFX3P48380 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFX3P48380 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFX3P48380 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
RFX3P48380 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC15.24■□□□□ 0.03
RFX3P48380 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
RFX3P48380 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
RFX3P48380 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC15.24■□□□□ 0.03
RFX3P48380 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC15.24■□□□□ 0.03
RFX3P48380 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms