Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC20.82■□□□□ 0.92
COL18A1P39060 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC20.82■□□□□ 0.92
COL18A1P39060 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL18A1P39060 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC20.82■□□□□ 0.92
COL18A1P39060 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC20.82■□□□□ 0.92
COL18A1P39060 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC20.82■□□□□ 0.92
COL18A1P39060 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL18A1P39060 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC20.82■□□□□ 0.92
COL18A1P39060 AHCYP2-201ENST00000430630 1300 ntBASIC20.82■□□□□ 0.92
COL18A1P39060 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL18A1P39060 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC20.82■□□□□ 0.92
COL18A1P39060 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL18A1P39060 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL18A1P39060 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC20.82■□□□□ 0.92
COL18A1P39060 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC20.82■□□□□ 0.92
COL18A1P39060 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL18A1P39060 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC20.82■□□□□ 0.92
COL18A1P39060 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC20.82■□□□□ 0.92
COL18A1P39060 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL18A1P39060 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL18A1P39060 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
COL18A1P39060 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL18A1P39060 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
COL18A1P39060 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL18A1P39060 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC20.81■□□□□ 0.92
COL18A1P39060 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC20.81■□□□□ 0.92
COL18A1P39060 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC20.81■□□□□ 0.92
COL18A1P39060 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL18A1P39060 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC20.81■□□□□ 0.92
COL18A1P39060 AP001258.2-201ENST00000529891 490 ntBASIC20.81■□□□□ 0.92
COL18A1P39060 AC023310.1-201ENST00000554836 735 ntBASIC20.81■□□□□ 0.92
COL18A1P39060 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC20.81■□□□□ 0.92
COL18A1P39060 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC20.81■□□□□ 0.92
COL18A1P39060 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC20.81■□□□□ 0.92
COL18A1P39060 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC20.81■□□□□ 0.92
COL18A1P39060 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC20.81■□□□□ 0.92
COL18A1P39060 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
COL18A1P39060 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL18A1P39060 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL18A1P39060 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL18A1P39060 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC20.81■□□□□ 0.92
COL18A1P39060 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL18A1P39060 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL18A1P39060 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL18A1P39060 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL18A1P39060 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
COL18A1P39060 PGGT1BP2-201ENST00000398621 1028 ntBASIC20.8■□□□□ 0.92
COL18A1P39060 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
COL18A1P39060 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC20.8■□□□□ 0.92
COL18A1P39060 AKR7A2P1-201ENST00000460134 915 ntBASIC20.8■□□□□ 0.92
COL18A1P39060 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC20.8■□□□□ 0.92
COL18A1P39060 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL18A1P39060 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC20.8■□□□□ 0.92
COL18A1P39060 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC20.8■□□□□ 0.92
COL18A1P39060 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL18A1P39060 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC20.8■□□□□ 0.92
COL18A1P39060 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
COL18A1P39060 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL18A1P39060 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC20.8■□□□□ 0.92
COL18A1P39060 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL18A1P39060 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC20.8■□□□□ 0.92
COL18A1P39060 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL18A1P39060 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL18A1P39060 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC20.8■□□□□ 0.92
COL18A1P39060 CSH2-202ENST00000345366 598 ntTSL 5 BASIC20.8■□□□□ 0.92
COL18A1P39060 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC20.8■□□□□ 0.92
COL18A1P39060 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL18A1P39060 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
COL18A1P39060 B9D1-203ENST00000395615 805 ntTSL 3 BASIC20.8■□□□□ 0.92
COL18A1P39060 BX284668.4-201ENST00000453917 508 ntBASIC20.8■□□□□ 0.92
COL18A1P39060 TSACC-208ENST00000481479 741 ntTSL 2 BASIC20.8■□□□□ 0.92
COL18A1P39060 ADM-202ENST00000524948 584 ntTSL 2 BASIC20.8■□□□□ 0.92
COL18A1P39060 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC20.8■□□□□ 0.92
COL18A1P39060 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC20.8■□□□□ 0.92
COL18A1P39060 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
COL18A1P39060 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL18A1P39060 FLII-221ENST00000578558 2377 ntTSL 5 BASIC20.79■□□□□ 0.92
COL18A1P39060 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL18A1P39060 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL18A1P39060 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
COL18A1P39060 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL18A1P39060 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL18A1P39060 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
COL18A1P39060 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL18A1P39060 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL18A1P39060 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL18A1P39060 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC20.79■□□□□ 0.92
COL18A1P39060 SUN1-204ENST00000403868 978 ntTSL 2 BASIC20.79■□□□□ 0.92
COL18A1P39060 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC20.79■□□□□ 0.92
COL18A1P39060 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC20.79■□□□□ 0.92
COL18A1P39060 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC20.79■□□□□ 0.92
COL18A1P39060 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC20.79■□□□□ 0.92
COL18A1P39060 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL18A1P39060 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC20.79■□□□□ 0.92
COL18A1P39060 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC20.79■□□□□ 0.92
COL18A1P39060 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL18A1P39060 ARTN-209ENST00000479128 471 ntTSL 3 BASIC20.79■□□□□ 0.92
COL18A1P39060 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC20.79■□□□□ 0.92
COL18A1P39060 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC20.79■□□□□ 0.92
COL18A1P39060 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms