Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXD3P31249 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXD3P31249 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXD3P31249 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
HOXD3P31249 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXD3P31249 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXD3P31249 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC12.51□□□□□ -0.41
HOXD3P31249 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC12.51□□□□□ -0.41
HOXD3P31249 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXD3P31249 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
HOXD3P31249 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC12.51□□□□□ -0.41
HOXD3P31249 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC12.51□□□□□ -0.41
HOXD3P31249 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC12.51□□□□□ -0.41
HOXD3P31249 AC009118.2-201ENST00000613275 655 ntBASIC12.51□□□□□ -0.41
HOXD3P31249 AL662799.1-202ENST00000614205 422 ntBASIC12.51□□□□□ -0.41
HOXD3P31249 AL138828.2-201ENST00000615812 383 ntBASIC12.51□□□□□ -0.41
HOXD3P31249 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXD3P31249 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXD3P31249 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
HOXD3P31249 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXD3P31249 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXD3P31249 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXD3P31249 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXD3P31249 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXD3P31249 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HOXD3P31249 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC12.51□□□□□ -0.41
HOXD3P31249 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC12.51□□□□□ -0.41
HOXD3P31249 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC12.51□□□□□ -0.41
HOXD3P31249 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HOXD3P31249 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
HOXD3P31249 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXD3P31249 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXD3P31249 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXD3P31249 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
HOXD3P31249 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
HOXD3P31249 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC12.51□□□□□ -0.41
HOXD3P31249 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC12.51□□□□□ -0.41
HOXD3P31249 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
HOXD3P31249 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXD3P31249 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
HOXD3P31249 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXD3P31249 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
HOXD3P31249 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXD3P31249 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXD3P31249 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC12.5□□□□□ -0.41
HOXD3P31249 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC12.5□□□□□ -0.41
HOXD3P31249 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC12.5□□□□□ -0.41
HOXD3P31249 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
HOXD3P31249 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC12.5□□□□□ -0.41
HOXD3P31249 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXD3P31249 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXD3P31249 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXD3P31249 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXD3P31249 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXD3P31249 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXD3P31249 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC12.5□□□□□ -0.41
HOXD3P31249 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXD3P31249 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXD3P31249 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXD3P31249 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HOXD3P31249 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC12.5□□□□□ -0.41
HOXD3P31249 GRAP-202ENST00000395635 834 ntTSL 2 BASIC12.5□□□□□ -0.41
HOXD3P31249 PIN1P1-201ENST00000412108 996 ntBASIC12.5□□□□□ -0.41
HOXD3P31249 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC12.5□□□□□ -0.41
HOXD3P31249 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC12.5□□□□□ -0.41
HOXD3P31249 MTND6P24-201ENST00000440466 518 ntBASIC12.5□□□□□ -0.41
HOXD3P31249 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
HOXD3P31249 RN7SL692P-201ENST00000464677 288 ntBASIC12.5□□□□□ -0.41
HOXD3P31249 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC12.5□□□□□ -0.41
HOXD3P31249 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC12.5□□□□□ -0.41
HOXD3P31249 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC12.5□□□□□ -0.41
HOXD3P31249 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC12.5□□□□□ -0.41
HOXD3P31249 MAX-210ENST00000555419 765 ntTSL 5 BASIC12.5□□□□□ -0.41
HOXD3P31249 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXD3P31249 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC12.5□□□□□ -0.41
HOXD3P31249 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC12.5□□□□□ -0.41
HOXD3P31249 AL365330.1-201ENST00000607459 531 ntBASIC12.5□□□□□ -0.41
HOXD3P31249 COQ4-205ENST00000609948 956 ntTSL 2 BASIC12.5□□□□□ -0.41
HOXD3P31249 AL008721.1-201ENST00000609964 604 ntBASIC12.5□□□□□ -0.41
HOXD3P31249 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC12.5□□□□□ -0.41
HOXD3P31249 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC12.5□□□□□ -0.41
HOXD3P31249 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXD3P31249 AC022144.1-201ENST00000602255 1580 ntBASIC12.5□□□□□ -0.41
HOXD3P31249 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HOXD3P31249 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HOXD3P31249 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
HOXD3P31249 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC12.5□□□□□ -0.41
HOXD3P31249 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC12.5□□□□□ -0.41
HOXD3P31249 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXD3P31249 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC12.5□□□□□ -0.41
HOXD3P31249 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC12.5□□□□□ -0.41
HOXD3P31249 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC12.5□□□□□ -0.41
HOXD3P31249 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXD3P31249 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
HOXD3P31249 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXD3P31249 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC12.5□□□□□ -0.41
HOXD3P31249 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC12.5□□□□□ -0.41
HOXD3P31249 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC12.5□□□□□ -0.41
HOXD3P31249 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
HOXD3P31249 CES3-203ENST00000543856 3178 ntTSL 2 BASIC12.5□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms