Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC15.65■□□□□ 0.1
HOXC4P09017 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC15.65■□□□□ 0.1
HOXC4P09017 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC15.65■□□□□ 0.1
HOXC4P09017 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
HOXC4P09017 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC15.65■□□□□ 0.1
HOXC4P09017 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.65■□□□□ 0.1
HOXC4P09017 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HOXC4P09017 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HOXC4P09017 AC138969.3-201ENST00000546612 1459 ntBASIC15.65■□□□□ 0.1
HOXC4P09017 AC138932.2-201ENST00000548268 1459 ntBASIC15.65■□□□□ 0.1
HOXC4P09017 AC126755.4-201ENST00000549796 1459 ntBASIC15.65■□□□□ 0.1
HOXC4P09017 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
HOXC4P09017 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC15.65■□□□□ 0.1
HOXC4P09017 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.64■□□□□ 0.1
HOXC4P09017 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.64■□□□□ 0.1
HOXC4P09017 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
HOXC4P09017 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
HOXC4P09017 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HOXC4P09017 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HOXC4P09017 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC15.64■□□□□ 0.09
HOXC4P09017 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HOXC4P09017 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HOXC4P09017 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HOXC4P09017 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC15.64■□□□□ 0.09
HOXC4P09017 MYCLP2-201ENST00000449268 967 ntBASIC15.64■□□□□ 0.09
HOXC4P09017 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC15.64■□□□□ 0.09
HOXC4P09017 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
HOXC4P09017 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.64■□□□□ 0.09
HOXC4P09017 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HOXC4P09017 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC15.64■□□□□ 0.09
HOXC4P09017 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC15.64■□□□□ 0.09
HOXC4P09017 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
HOXC4P09017 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HOXC4P09017 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC15.64■□□□□ 0.09
HOXC4P09017 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC15.64■□□□□ 0.09
HOXC4P09017 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC15.64■□□□□ 0.09
HOXC4P09017 AC008494.3-201ENST00000606615 944 ntBASIC15.64■□□□□ 0.09
HOXC4P09017 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC15.64■□□□□ 0.09
HOXC4P09017 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HOXC4P09017 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.64■□□□□ 0.09
HOXC4P09017 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HOXC4P09017 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.64■□□□□ 0.09
HOXC4P09017 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC15.64■□□□□ 0.09
HOXC4P09017 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HOXC4P09017 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
HOXC4P09017 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HOXC4P09017 PCDHA14-201ENST00000506751 2298 ntBASIC15.64■□□□□ 0.09
HOXC4P09017 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.64■□□□□ 0.09
HOXC4P09017 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
HOXC4P09017 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
HOXC4P09017 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC15.63■□□□□ 0.09
HOXC4P09017 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HOXC4P09017 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC15.63■□□□□ 0.09
HOXC4P09017 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
HOXC4P09017 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
HOXC4P09017 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.63■□□□□ 0.09
HOXC4P09017 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.63■□□□□ 0.09
HOXC4P09017 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC15.63■□□□□ 0.09
HOXC4P09017 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC15.63■□□□□ 0.09
HOXC4P09017 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
HOXC4P09017 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
HOXC4P09017 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HOXC4P09017 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HOXC4P09017 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC15.63■□□□□ 0.09
HOXC4P09017 PKIG-203ENST00000372887 769 ntTSL 3 BASIC15.63■□□□□ 0.09
HOXC4P09017 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC15.63■□□□□ 0.09
HOXC4P09017 AP006294.1-201ENST00000415407 339 ntBASIC15.63■□□□□ 0.09
HOXC4P09017 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC15.63■□□□□ 0.09
HOXC4P09017 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC15.63■□□□□ 0.09
HOXC4P09017 RN7SL399P-201ENST00000471648 279 ntBASIC15.63■□□□□ 0.09
HOXC4P09017 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
HOXC4P09017 SLED1-202ENST00000512051 380 ntBASIC15.63■□□□□ 0.09
HOXC4P09017 EHF-205ENST00000527935 557 ntTSL 2 BASIC15.63■□□□□ 0.09
HOXC4P09017 AC123567.1-201ENST00000548294 1261 ntBASIC15.63■□□□□ 0.09
HOXC4P09017 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC15.63■□□□□ 0.09
HOXC4P09017 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC15.63■□□□□ 0.09
HOXC4P09017 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
HOXC4P09017 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC15.63■□□□□ 0.09
HOXC4P09017 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HOXC4P09017 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HOXC4P09017 AC007431.3-201ENST00000623221 587 ntBASIC15.63■□□□□ 0.09
HOXC4P09017 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
HOXC4P09017 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
HOXC4P09017 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HOXC4P09017 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.63■□□□□ 0.09
HOXC4P09017 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
HOXC4P09017 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HOXC4P09017 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC15.63■□□□□ 0.09
HOXC4P09017 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
HOXC4P09017 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
HOXC4P09017 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC15.63■□□□□ 0.09
HOXC4P09017 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HOXC4P09017 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
HOXC4P09017 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC15.63■□□□□ 0.09
HOXC4P09017 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
HOXC4P09017 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
HOXC4P09017 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.63■□□□□ 0.09
HOXC4P09017 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
HOXC4P09017 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC15.63■□□□□ 0.09
HOXC4P09017 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC15.62■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms