Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.08■□□□□ 0.16
TRIM39Q9HCM9 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC16.08■□□□□ 0.16
TRIM39Q9HCM9 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.08■□□□□ 0.16
TRIM39Q9HCM9 HLA-DRB6-201ENST00000411500 1235 ntBASIC16.08■□□□□ 0.16
TRIM39Q9HCM9 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.08■□□□□ 0.16
TRIM39Q9HCM9 KLF2P3-201ENST00000451977 1087 ntBASIC16.08■□□□□ 0.16
TRIM39Q9HCM9 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.08■□□□□ 0.16
TRIM39Q9HCM9 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.08■□□□□ 0.16
TRIM39Q9HCM9 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.08■□□□□ 0.16
TRIM39Q9HCM9 AC106028.4-201ENST00000614509 607 ntBASIC16.08■□□□□ 0.16
TRIM39Q9HCM9 AC007967.4-201ENST00000614700 386 ntBASIC16.08■□□□□ 0.16
TRIM39Q9HCM9 ORC5-208ENST00000626700 344 ntTSL 3 BASIC16.08■□□□□ 0.16
TRIM39Q9HCM9 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRIM39Q9HCM9 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRIM39Q9HCM9 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
TRIM39Q9HCM9 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
TRIM39Q9HCM9 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TRIM39Q9HCM9 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRIM39Q9HCM9 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.08■□□□□ 0.16
TRIM39Q9HCM9 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
TRIM39Q9HCM9 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.08■□□□□ 0.16
TRIM39Q9HCM9 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
TRIM39Q9HCM9 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
TRIM39Q9HCM9 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 MIR4321-201ENST00000592276 80 ntBASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
TRIM39Q9HCM9 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 AL035456.1-201ENST00000456064 1369 ntBASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 CYMP-203ENST00000474680 1263 ntBASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC16.06■□□□□ 0.16
TRIM39Q9HCM9 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms