Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
NUP54Q7Z3B4 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
NUP54Q7Z3B4 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
NUP54Q7Z3B4 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
NUP54Q7Z3B4 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC14.99□□□□□ -0.01
NUP54Q7Z3B4 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC14.99□□□□□ -0.01
NUP54Q7Z3B4 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC14.99□□□□□ -0.01
NUP54Q7Z3B4 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
NUP54Q7Z3B4 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC14.99□□□□□ -0.01
NUP54Q7Z3B4 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NUP54Q7Z3B4 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
NUP54Q7Z3B4 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.99□□□□□ -0.01
NUP54Q7Z3B4 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
NUP54Q7Z3B4 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 REXO1L8P-201ENST00000604378 1897 ntBASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 HNRNPFP1-201ENST00000391730 1133 ntBASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 METTL21AP1-201ENST00000438852 635 ntBASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 SPDYE14P-201ENST00000442619 822 ntBASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 AC109322.1-201ENST00000524499 1264 ntBASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 AC018529.1-201ENST00000613063 361 ntBASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
NUP54Q7Z3B4 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 TNRC18P3-201ENST00000441896 2691 ntBASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 PON3-203ENST00000427422 894 ntTSL 3 BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 AC069262.1-201ENST00000539058 672 ntBASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 MAX-210ENST00000555419 765 ntTSL 5 BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC14.97□□□□□ -0.01
NUP54Q7Z3B4 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms