Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC17.15■□□□□ 0.34
USP41Q3LFD5 AC025048.3-201ENST00000590609 569 ntBASIC17.15■□□□□ 0.34
USP41Q3LFD5 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
USP41Q3LFD5 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP41Q3LFD5 AC005702.4-201ENST00000618393 416 ntBASIC17.15■□□□□ 0.34
USP41Q3LFD5 IGHV3-72-202ENST00000621503 303 ntBASIC17.15■□□□□ 0.34
USP41Q3LFD5 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.15■□□□□ 0.34
USP41Q3LFD5 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
USP41Q3LFD5 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
USP41Q3LFD5 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP41Q3LFD5 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC17.15■□□□□ 0.34
USP41Q3LFD5 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP41Q3LFD5 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP41Q3LFD5 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USP41Q3LFD5 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
USP41Q3LFD5 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.15■□□□□ 0.34
USP41Q3LFD5 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
USP41Q3LFD5 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.15■□□□□ 0.34
USP41Q3LFD5 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
USP41Q3LFD5 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
USP41Q3LFD5 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP41Q3LFD5 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP41Q3LFD5 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP41Q3LFD5 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP41Q3LFD5 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP41Q3LFD5 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.14■□□□□ 0.33
USP41Q3LFD5 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC17.14■□□□□ 0.33
USP41Q3LFD5 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP41Q3LFD5 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
USP41Q3LFD5 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC17.14■□□□□ 0.33
USP41Q3LFD5 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC17.14■□□□□ 0.33
USP41Q3LFD5 MYCLP2-201ENST00000449268 967 ntBASIC17.14■□□□□ 0.33
USP41Q3LFD5 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP41Q3LFD5 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC17.14■□□□□ 0.33
USP41Q3LFD5 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USP41Q3LFD5 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC17.14■□□□□ 0.33
USP41Q3LFD5 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
USP41Q3LFD5 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC17.14■□□□□ 0.33
USP41Q3LFD5 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
USP41Q3LFD5 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
USP41Q3LFD5 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC17.14■□□□□ 0.33
USP41Q3LFD5 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC17.14■□□□□ 0.33
USP41Q3LFD5 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
USP41Q3LFD5 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
USP41Q3LFD5 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP41Q3LFD5 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USP41Q3LFD5 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
USP41Q3LFD5 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP41Q3LFD5 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
USP41Q3LFD5 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USP41Q3LFD5 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.14■□□□□ 0.33
USP41Q3LFD5 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.14■□□□□ 0.33
USP41Q3LFD5 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.14■□□□□ 0.33
USP41Q3LFD5 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC17.14■□□□□ 0.33
USP41Q3LFD5 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP41Q3LFD5 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP41Q3LFD5 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP41Q3LFD5 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USP41Q3LFD5 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USP41Q3LFD5 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USP41Q3LFD5 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC17.13■□□□□ 0.33
USP41Q3LFD5 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP41Q3LFD5 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP41Q3LFD5 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
USP41Q3LFD5 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP41Q3LFD5 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
USP41Q3LFD5 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP41Q3LFD5 AL592424.1-201ENST00000563624 1536 ntBASIC17.13■□□□□ 0.33
USP41Q3LFD5 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC17.13■□□□□ 0.33
USP41Q3LFD5 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP41Q3LFD5 PCDHB19P-201ENST00000570871 2371 ntBASIC17.13■□□□□ 0.33
USP41Q3LFD5 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
USP41Q3LFD5 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
USP41Q3LFD5 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC17.13■□□□□ 0.33
USP41Q3LFD5 GPR53P-205ENST00000457298 1084 ntBASIC17.13■□□□□ 0.33
USP41Q3LFD5 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC17.13■□□□□ 0.33
USP41Q3LFD5 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USP41Q3LFD5 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC17.13■□□□□ 0.33
USP41Q3LFD5 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC17.13■□□□□ 0.33
USP41Q3LFD5 AC123567.1-201ENST00000548294 1261 ntBASIC17.13■□□□□ 0.33
USP41Q3LFD5 SUOX-214ENST00000551841 906 ntTSL 3 BASIC17.13■□□□□ 0.33
USP41Q3LFD5 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USP41Q3LFD5 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC17.13■□□□□ 0.33
USP41Q3LFD5 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC17.13■□□□□ 0.33
USP41Q3LFD5 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP41Q3LFD5 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP41Q3LFD5 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP41Q3LFD5 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP41Q3LFD5 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP41Q3LFD5 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP41Q3LFD5 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
USP41Q3LFD5 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP41Q3LFD5 UBALD1-205ENST00000590891 2641 ntBASIC17.13■□□□□ 0.33
USP41Q3LFD5 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP41Q3LFD5 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
USP41Q3LFD5 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
USP41Q3LFD5 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
USP41Q3LFD5 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP41Q3LFD5 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
USP41Q3LFD5 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms