Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 ABR-203ENST00000536794 2213 ntTSL 2 BASIC15.58■□□□□ 0.08
COL28A1Q2UY09 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 AC016027.1-202ENST00000607927 1699 ntBASIC15.57■□□□□ 0.08
COL28A1Q2UY09 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 PCDHA1-201ENST00000378133 2726 ntBASIC15.57■□□□□ 0.08
COL28A1Q2UY09 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
COL28A1Q2UY09 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 BOLA2P3-201ENST00000404566 256 ntBASIC15.56■□□□□ 0.08
COL28A1Q2UY09 CENPM-206ENST00000407253 818 ntTSL 2 BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 AC142381.1-201ENST00000426099 345 ntBASIC15.56■□□□□ 0.08
COL28A1Q2UY09 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 AC008735.3-201ENST00000596646 500 ntBASIC15.56■□□□□ 0.08
COL28A1Q2UY09 AC004790.1-201ENST00000612686 536 ntBASIC15.56■□□□□ 0.08
COL28A1Q2UY09 MIR6727-201ENST00000620702 65 ntBASIC15.56■□□□□ 0.08
COL28A1Q2UY09 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 BTBD7P1-201ENST00000447253 1453 ntBASIC15.56■□□□□ 0.08
COL28A1Q2UY09 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
COL28A1Q2UY09 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms