Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MSX2P35548 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
MSX2P35548 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
MSX2P35548 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MSX2P35548 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MSX2P35548 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
MSX2P35548 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
MSX2P35548 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSX2P35548 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
MSX2P35548 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.5■□□□□ 0.07
MSX2P35548 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSX2P35548 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC15.5■□□□□ 0.07
MSX2P35548 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSX2P35548 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC15.5■□□□□ 0.07
MSX2P35548 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSX2P35548 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
MSX2P35548 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC15.5■□□□□ 0.07
MSX2P35548 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC15.5■□□□□ 0.07
MSX2P35548 TSSC2-201ENST00000450217 709 ntBASIC15.5■□□□□ 0.07
MSX2P35548 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
MSX2P35548 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
MSX2P35548 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC15.5■□□□□ 0.07
MSX2P35548 MPI-205ENST00000562606 1052 ntTSL 3 BASIC15.5■□□□□ 0.07
MSX2P35548 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC15.5■□□□□ 0.07
MSX2P35548 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC15.5■□□□□ 0.07
MSX2P35548 MIR5100-201ENST00000579544 119 ntBASIC15.5■□□□□ 0.07
MSX2P35548 AP002414.4-201ENST00000589764 1148 ntBASIC15.5■□□□□ 0.07
MSX2P35548 AC020765.3-201ENST00000613051 740 ntBASIC15.5■□□□□ 0.07
MSX2P35548 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC15.5■□□□□ 0.07
MSX2P35548 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC15.5■□□□□ 0.07
MSX2P35548 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
MSX2P35548 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSX2P35548 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSX2P35548 AC104581.4-201ENST00000623126 3052 ntBASIC15.5■□□□□ 0.07
MSX2P35548 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSX2P35548 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
MSX2P35548 MED25-212ENST00000618715 1467 ntTSL 5 BASIC15.5■□□□□ 0.07
MSX2P35548 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSX2P35548 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC15.5■□□□□ 0.07
MSX2P35548 AC117489.1-201ENST00000625169 3217 ntBASIC15.5■□□□□ 0.07
MSX2P35548 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
MSX2P35548 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSX2P35548 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSX2P35548 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSX2P35548 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC15.5■□□□□ 0.07
MSX2P35548 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
MSX2P35548 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
MSX2P35548 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MSX2P35548 CNTNAP3P2-201ENST00000617175 3861 ntBASIC15.49■□□□□ 0.07
MSX2P35548 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
MSX2P35548 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
MSX2P35548 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MSX2P35548 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MSX2P35548 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC15.49■□□□□ 0.07
MSX2P35548 AC005332.1-201ENST00000577698 1310 ntBASIC15.49■□□□□ 0.07
MSX2P35548 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
MSX2P35548 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
MSX2P35548 PI4KAP1-204ENST00000612579 1703 ntBASIC15.49■□□□□ 0.07
MSX2P35548 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
MSX2P35548 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
MSX2P35548 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC15.49■□□□□ 0.07
MSX2P35548 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC15.49■□□□□ 0.07
MSX2P35548 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
MSX2P35548 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC15.49■□□□□ 0.07
MSX2P35548 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC15.49■□□□□ 0.07
MSX2P35548 AC211429.1-201ENST00000415277 523 ntBASIC15.49■□□□□ 0.07
MSX2P35548 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MSX2P35548 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
MSX2P35548 AL139424.1-201ENST00000607572 797 ntBASIC15.49■□□□□ 0.07
MSX2P35548 AP001269.4-201ENST00000609611 512 ntBASIC15.49■□□□□ 0.07
MSX2P35548 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
MSX2P35548 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
MSX2P35548 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.49■□□□□ 0.07
MSX2P35548 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.49■□□□□ 0.07
MSX2P35548 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC15.49■□□□□ 0.07
MSX2P35548 AP005117.1-201ENST00000584346 1413 ntBASIC15.49■□□□□ 0.07
MSX2P35548 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MSX2P35548 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC15.49■□□□□ 0.07
MSX2P35548 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MSX2P35548 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MSX2P35548 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
MSX2P35548 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
MSX2P35548 AC090616.6-203ENST00000579186 1945 ntBASIC15.49■□□□□ 0.07
MSX2P35548 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
MSX2P35548 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC15.48■□□□□ 0.07
MSX2P35548 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
MSX2P35548 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MSX2P35548 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
MSX2P35548 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
MSX2P35548 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC15.48■□□□□ 0.07
MSX2P35548 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
MSX2P35548 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
MSX2P35548 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.48■□□□□ 0.07
MSX2P35548 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MSX2P35548 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
MSX2P35548 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC15.48■□□□□ 0.07
MSX2P35548 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
MSX2P35548 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
MSX2P35548 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC15.48■□□□□ 0.07
MSX2P35548 GOLGA8DP-202ENST00000341390 2184 ntBASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms