Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA2Q9Y261 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 AL596257.1-201ENST00000641463 2694 ntBASIC13.13□□□□□ -0.31
FOXA2Q9Y261 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 HMGA1P7-201ENST00000406908 502 ntBASIC13.13□□□□□ -0.31
FOXA2Q9Y261 IMP4-203ENST00000409935 958 ntTSL 5 BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 AC023274.1-201ENST00000418278 595 ntBASIC13.13□□□□□ -0.31
FOXA2Q9Y261 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 FIS1-203ENST00000442303 631 ntTSL 3 BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 AC074386.1-202ENST00000463561 864 ntBASIC13.13□□□□□ -0.31
FOXA2Q9Y261 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 WDR88-203ENST00000592765 651 ntTSL 5 BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 AL671883.3-201ENST00000603274 991 ntBASIC13.13□□□□□ -0.31
FOXA2Q9Y261 AC068137.2-201ENST00000605408 478 ntBASIC13.13□□□□□ -0.31
FOXA2Q9Y261 AL513190.1-201ENST00000621254 727 ntBASIC13.13□□□□□ -0.31
FOXA2Q9Y261 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC13.13□□□□□ -0.31
FOXA2Q9Y261 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 AC008677.1-201ENST00000519230 1561 ntBASIC13.12□□□□□ -0.31
FOXA2Q9Y261 MBP-202ENST00000355994 2772 ntTSL 5 BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 PGAM5P1-201ENST00000518923 814 ntBASIC13.12□□□□□ -0.31
FOXA2Q9Y261 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
FOXA2Q9Y261 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms