Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL20A1Q9P218 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC18.17■□□□□ 0.5
COL20A1Q9P218 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC18.17■□□□□ 0.5
COL20A1Q9P218 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL20A1Q9P218 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC18.17■□□□□ 0.5
COL20A1Q9P218 REXO1L1P-202ENST00000608646 1974 ntBASIC18.17■□□□□ 0.5
COL20A1Q9P218 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC18.17■□□□□ 0.5
COL20A1Q9P218 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL20A1Q9P218 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL20A1Q9P218 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
COL20A1Q9P218 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC18.16■□□□□ 0.5
COL20A1Q9P218 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL20A1Q9P218 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
COL20A1Q9P218 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL20A1Q9P218 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL20A1Q9P218 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
COL20A1Q9P218 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC18.16■□□□□ 0.5
COL20A1Q9P218 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
COL20A1Q9P218 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL20A1Q9P218 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL20A1Q9P218 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL20A1Q9P218 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC18.16■□□□□ 0.5
COL20A1Q9P218 PGF-202ENST00000405431 666 ntTSL 5 BASIC18.16■□□□□ 0.5
COL20A1Q9P218 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL20A1Q9P218 MEIS3P1-201ENST00000495167 958 ntBASIC18.16■□□□□ 0.5
COL20A1Q9P218 AC123567.1-201ENST00000548294 1261 ntBASIC18.16■□□□□ 0.5
COL20A1Q9P218 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC18.16■□□□□ 0.5
COL20A1Q9P218 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
COL20A1Q9P218 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC18.16■□□□□ 0.5
COL20A1Q9P218 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC18.16■□□□□ 0.5
COL20A1Q9P218 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL20A1Q9P218 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL20A1Q9P218 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL20A1Q9P218 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL20A1Q9P218 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
COL20A1Q9P218 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC18.16■□□□□ 0.5
COL20A1Q9P218 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL20A1Q9P218 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL20A1Q9P218 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL20A1Q9P218 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL20A1Q9P218 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC18.15■□□□□ 0.5
COL20A1Q9P218 AC018892.3-201ENST00000623986 2499 ntBASIC18.15■□□□□ 0.5
COL20A1Q9P218 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL20A1Q9P218 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL20A1Q9P218 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL20A1Q9P218 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL20A1Q9P218 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC18.15■□□□□ 0.5
COL20A1Q9P218 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC18.15■□□□□ 0.5
COL20A1Q9P218 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC18.15■□□□□ 0.5
COL20A1Q9P218 MYCLP2-201ENST00000449268 967 ntBASIC18.15■□□□□ 0.5
COL20A1Q9P218 RHOA-206ENST00000454011 889 ntTSL 2 BASIC18.15■□□□□ 0.5
COL20A1Q9P218 INE1-201ENST00000456273 945 ntBASIC18.15■□□□□ 0.5
COL20A1Q9P218 FADS2-205ENST00000517839 469 ntTSL 3 BASIC18.15■□□□□ 0.5
COL20A1Q9P218 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC18.15■□□□□ 0.5
COL20A1Q9P218 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
COL20A1Q9P218 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL20A1Q9P218 POLE2-203ENST00000553805 496 ntTSL 2 BASIC18.15■□□□□ 0.5
COL20A1Q9P218 HNRNPUP1-201ENST00000554987 333 ntBASIC18.15■□□□□ 0.5
COL20A1Q9P218 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC18.15■□□□□ 0.5
COL20A1Q9P218 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC18.15■□□□□ 0.5
COL20A1Q9P218 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC18.15■□□□□ 0.5
COL20A1Q9P218 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC18.15■□□□□ 0.5
COL20A1Q9P218 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL20A1Q9P218 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL20A1Q9P218 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC18.15■□□□□ 0.5
COL20A1Q9P218 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL20A1Q9P218 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC18.15■□□□□ 0.5
COL20A1Q9P218 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL20A1Q9P218 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL20A1Q9P218 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
COL20A1Q9P218 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC18.15■□□□□ 0.5
COL20A1Q9P218 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC18.15■□□□□ 0.5
COL20A1Q9P218 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
COL20A1Q9P218 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
COL20A1Q9P218 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
COL20A1Q9P218 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.5
COL20A1Q9P218 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC18.14■□□□□ 0.49
COL20A1Q9P218 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL20A1Q9P218 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL20A1Q9P218 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
COL20A1Q9P218 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC18.14■□□□□ 0.49
COL20A1Q9P218 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL20A1Q9P218 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC18.14■□□□□ 0.49
COL20A1Q9P218 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC18.14■□□□□ 0.49
COL20A1Q9P218 NAA50-208ENST00000497255 789 ntTSL 5 BASIC18.14■□□□□ 0.49
COL20A1Q9P218 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC18.14■□□□□ 0.49
COL20A1Q9P218 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
COL20A1Q9P218 TIMM17BP1-201ENST00000545713 516 ntBASIC18.14■□□□□ 0.49
COL20A1Q9P218 AC132938.2-201ENST00000579188 680 ntBASIC18.14■□□□□ 0.49
COL20A1Q9P218 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC18.14■□□□□ 0.49
COL20A1Q9P218 AL591163.1-201ENST00000641757 987 ntBASIC18.14■□□□□ 0.49
COL20A1Q9P218 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC18.14■□□□□ 0.49
COL20A1Q9P218 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL20A1Q9P218 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC18.14■□□□□ 0.49
COL20A1Q9P218 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL20A1Q9P218 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
COL20A1Q9P218 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.14■□□□□ 0.49
COL20A1Q9P218 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL20A1Q9P218 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL20A1Q9P218 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms