Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 AC011270.2-201ENST00000624293 2550 ntBASIC16.74■□□□□ 0.27
PCDH9Q9HC56 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 HAUS4P1-201ENST00000406739 1145 ntBASIC16.74■□□□□ 0.27
PCDH9Q9HC56 BX842568.4-201ENST00000421222 227 ntBASIC16.74■□□□□ 0.27
PCDH9Q9HC56 DNAJB3-201ENST00000446806 729 ntBASIC16.74■□□□□ 0.27
PCDH9Q9HC56 AC245100.5-201ENST00000452108 331 ntBASIC16.74■□□□□ 0.27
PCDH9Q9HC56 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 C20orf181-201ENST00000623918 480 ntBASIC16.74■□□□□ 0.27
PCDH9Q9HC56 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
PCDH9Q9HC56 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 CALM1-205ENST00000553542 877 ntTSL 5 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 AC099522.2-201ENST00000607001 744 ntBASIC16.73■□□□□ 0.27
PCDH9Q9HC56 AL078644.1-201ENST00000609881 752 ntBASIC16.73■□□□□ 0.27
PCDH9Q9HC56 HOTTIP_1.1-201ENST00000620415 57 ntBASIC16.73■□□□□ 0.27
PCDH9Q9HC56 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.73■□□□□ 0.27
PCDH9Q9HC56 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PCDH9Q9HC56 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms