Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC21.09■□□□□ 0.97
USP54Q70EL1 FAM8A2P-201ENST00000528813 1142 ntBASIC21.09■□□□□ 0.97
USP54Q70EL1 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC21.09■□□□□ 0.97
USP54Q70EL1 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC21.09■□□□□ 0.97
USP54Q70EL1 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
USP54Q70EL1 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC21.08■□□□□ 0.97
USP54Q70EL1 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
USP54Q70EL1 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
USP54Q70EL1 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
USP54Q70EL1 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
USP54Q70EL1 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
USP54Q70EL1 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC21.08■□□□□ 0.97
USP54Q70EL1 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
USP54Q70EL1 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
USP54Q70EL1 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC21.08■□□□□ 0.97
USP54Q70EL1 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
USP54Q70EL1 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
USP54Q70EL1 AC022188.1-201ENST00000620960 1664 ntBASIC21.08■□□□□ 0.96
USP54Q70EL1 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC21.08■□□□□ 0.96
USP54Q70EL1 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
USP54Q70EL1 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
USP54Q70EL1 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
USP54Q70EL1 AC007969.1-201ENST00000433675 447 ntBASIC21.08■□□□□ 0.96
USP54Q70EL1 AC006033.1-201ENST00000440505 426 ntBASIC21.08■□□□□ 0.96
USP54Q70EL1 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.96
USP54Q70EL1 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
USP54Q70EL1 MIR4313-201ENST00000580760 101 ntBASIC21.08■□□□□ 0.96
USP54Q70EL1 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
USP54Q70EL1 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
USP54Q70EL1 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
USP54Q70EL1 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC21.08■□□□□ 0.96
USP54Q70EL1 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP54Q70EL1 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USP54Q70EL1 AC124067.4-201ENST00000519691 2379 ntBASIC21.07■□□□□ 0.96
USP54Q70EL1 AC018892.3-201ENST00000623986 2499 ntBASIC21.07■□□□□ 0.96
USP54Q70EL1 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC21.07■□□□□ 0.96
USP54Q70EL1 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
USP54Q70EL1 AC080080.1-201ENST00000625121 2420 ntBASIC21.07■□□□□ 0.96
USP54Q70EL1 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC21.07■□□□□ 0.96
USP54Q70EL1 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP54Q70EL1 AC007551.1-201ENST00000457394 519 ntBASIC21.07■□□□□ 0.96
USP54Q70EL1 RPL13AP20-201ENST00000459725 609 ntBASIC21.07■□□□□ 0.96
USP54Q70EL1 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC21.07■□□□□ 0.96
USP54Q70EL1 CD74-212ENST00000524315 584 ntTSL 5 BASIC21.07■□□□□ 0.96
USP54Q70EL1 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
USP54Q70EL1 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
USP54Q70EL1 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC21.07■□□□□ 0.96
USP54Q70EL1 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC21.07■□□□□ 0.96
USP54Q70EL1 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC21.07■□□□□ 0.96
USP54Q70EL1 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USP54Q70EL1 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP54Q70EL1 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP54Q70EL1 POLL-217ENST00000628479 1953 ntTSL 5 BASIC21.07■□□□□ 0.96
USP54Q70EL1 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP54Q70EL1 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC21.07■□□□□ 0.96
USP54Q70EL1 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
USP54Q70EL1 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP54Q70EL1 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
USP54Q70EL1 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP54Q70EL1 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC21.06■□□□□ 0.96
USP54Q70EL1 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC21.06■□□□□ 0.96
USP54Q70EL1 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC21.06■□□□□ 0.96
USP54Q70EL1 AP001582.1-201ENST00000525856 295 ntBASIC21.06■□□□□ 0.96
USP54Q70EL1 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC21.06■□□□□ 0.96
USP54Q70EL1 AGER-214ENST00000538695 487 ntTSL 2 BASIC21.06■□□□□ 0.96
USP54Q70EL1 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC21.06■□□□□ 0.96
USP54Q70EL1 KSR1-207ENST00000578981 748 ntTSL 4 BASIC21.06■□□□□ 0.96
USP54Q70EL1 AC243960.2-201ENST00000600996 747 ntBASIC21.06■□□□□ 0.96
USP54Q70EL1 AC244093.1-201ENST00000610837 814 ntBASIC21.06■□□□□ 0.96
USP54Q70EL1 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC21.06■□□□□ 0.96
USP54Q70EL1 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP54Q70EL1 AL645728.2-202ENST00000641679 227 ntBASIC21.06■□□□□ 0.96
USP54Q70EL1 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP54Q70EL1 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP54Q70EL1 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP54Q70EL1 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP54Q70EL1 AC022211.2-201ENST00000585075 2527 ntBASIC21.06■□□□□ 0.96
USP54Q70EL1 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC21.06■□□□□ 0.96
USP54Q70EL1 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP54Q70EL1 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
USP54Q70EL1 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC21.06■□□□□ 0.96
USP54Q70EL1 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
USP54Q70EL1 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USP54Q70EL1 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP54Q70EL1 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP54Q70EL1 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC21.05■□□□□ 0.96
USP54Q70EL1 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC21.05■□□□□ 0.96
USP54Q70EL1 BCYRN1-201ENST00000418539 200 ntBASIC21.05■□□□□ 0.96
USP54Q70EL1 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC21.05■□□□□ 0.96
USP54Q70EL1 AC078819.1-201ENST00000547454 765 ntBASIC21.05■□□□□ 0.96
USP54Q70EL1 AC012085.1-201ENST00000548270 765 ntBASIC21.05■□□□□ 0.96
USP54Q70EL1 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC21.05■□□□□ 0.96
USP54Q70EL1 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC21.05■□□□□ 0.96
USP54Q70EL1 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC21.05■□□□□ 0.96
USP54Q70EL1 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USP54Q70EL1 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC21.05■□□□□ 0.96
USP54Q70EL1 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC21.05■□□□□ 0.96
USP54Q70EL1 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP54Q70EL1 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP54Q70EL1 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms