Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.7■□□□□ 0.1
FOXA1P55317 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
FOXA1P55317 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
FOXA1P55317 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
FOXA1P55317 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC15.69■□□□□ 0.1
FOXA1P55317 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.69■□□□□ 0.1
FOXA1P55317 AC020658.6-201ENST00000623564 1870 ntBASIC15.69■□□□□ 0.1
FOXA1P55317 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.69■□□□□ 0.1
FOXA1P55317 AC104109.2-201ENST00000602919 1418 ntBASIC15.69■□□□□ 0.1
FOXA1P55317 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA1P55317 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA1P55317 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.69■□□□□ 0.1
FOXA1P55317 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA1P55317 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA1P55317 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
FOXA1P55317 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.69■□□□□ 0.1
FOXA1P55317 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.69■□□□□ 0.1
FOXA1P55317 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.69■□□□□ 0.1
FOXA1P55317 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA1P55317 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC15.69■□□□□ 0.1
FOXA1P55317 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC15.69■□□□□ 0.1
FOXA1P55317 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC15.69■□□□□ 0.1
FOXA1P55317 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC15.69■□□□□ 0.1
FOXA1P55317 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC15.69■□□□□ 0.1
FOXA1P55317 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
FOXA1P55317 AC002347.1-201ENST00000569543 541 ntBASIC15.69■□□□□ 0.1
FOXA1P55317 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
FOXA1P55317 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC15.69■□□□□ 0.1
FOXA1P55317 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA1P55317 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA1P55317 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC15.69■□□□□ 0.1
FOXA1P55317 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA1P55317 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.69■□□□□ 0.1
FOXA1P55317 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
FOXA1P55317 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
FOXA1P55317 AC134407.2-201ENST00000625089 1978 ntBASIC15.69■□□□□ 0.1
FOXA1P55317 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA1P55317 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
FOXA1P55317 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC15.69■□□□□ 0.1
FOXA1P55317 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
FOXA1P55317 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC15.68■□□□□ 0.1
FOXA1P55317 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA1P55317 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC15.68■□□□□ 0.1
FOXA1P55317 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.68■□□□□ 0.1
FOXA1P55317 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC15.68■□□□□ 0.1
FOXA1P55317 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC15.68■□□□□ 0.1
FOXA1P55317 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA1P55317 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA1P55317 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA1P55317 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC15.68■□□□□ 0.1
FOXA1P55317 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.68■□□□□ 0.1
FOXA1P55317 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA1P55317 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA1P55317 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
FOXA1P55317 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA1P55317 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA1P55317 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.68■□□□□ 0.1
FOXA1P55317 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
FOXA1P55317 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA1P55317 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA1P55317 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA1P55317 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.68■□□□□ 0.1
FOXA1P55317 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA1P55317 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC15.68■□□□□ 0.1
FOXA1P55317 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC15.68■□□□□ 0.1
FOXA1P55317 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA1P55317 CRCP-205ENST00000431089 942 ntTSL 2 BASIC15.68■□□□□ 0.1
FOXA1P55317 AC007967.2-201ENST00000432613 625 ntBASIC15.68■□□□□ 0.1
FOXA1P55317 MDH2-205ENST00000461263 648 ntTSL 2 BASIC15.68■□□□□ 0.1
FOXA1P55317 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA1P55317 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.68■□□□□ 0.1
FOXA1P55317 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC15.68■□□□□ 0.1
FOXA1P55317 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
FOXA1P55317 FHL2-212ENST00000607522 759 ntTSL 2 BASIC15.68■□□□□ 0.1
FOXA1P55317 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
FOXA1P55317 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA1P55317 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA1P55317 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA1P55317 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA1P55317 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA1P55317 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
FOXA1P55317 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA1P55317 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC15.68■□□□□ 0.1
FOXA1P55317 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
FOXA1P55317 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
FOXA1P55317 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
FOXA1P55317 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA1P55317 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.67■□□□□ 0.1
FOXA1P55317 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.67■□□□□ 0.1
FOXA1P55317 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA1P55317 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC15.67■□□□□ 0.1
FOXA1P55317 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.67■□□□□ 0.1
FOXA1P55317 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA1P55317 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA1P55317 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC15.67■□□□□ 0.1
FOXA1P55317 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA1P55317 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.67■□□□□ 0.1
FOXA1P55317 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
FOXA1P55317 AC011477.6-201ENST00000604980 1927 ntBASIC15.67■□□□□ 0.1
FOXA1P55317 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms