Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CTCFP49711 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.66■□□□□ 0.58
CTCFP49711 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CTCFP49711 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CTCFP49711 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTCFP49711 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTCFP49711 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CTCFP49711 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CTCFP49711 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTCFP49711 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CTCFP49711 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTCFP49711 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTCFP49711 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTCFP49711 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CTCFP49711 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CTCFP49711 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
CTCFP49711 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC18.65■□□□□ 0.58
CTCFP49711 C2orf27AP3-201ENST00000434123 579 ntBASIC18.65■□□□□ 0.58
CTCFP49711 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC18.65■□□□□ 0.58
CTCFP49711 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
CTCFP49711 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC18.65■□□□□ 0.58
CTCFP49711 AC018635.2-201ENST00000608625 364 ntBASIC18.65■□□□□ 0.58
CTCFP49711 AL354718.3-201ENST00000616414 581 ntBASIC18.65■□□□□ 0.58
CTCFP49711 CR382287.1-201ENST00000623954 586 ntBASIC18.65■□□□□ 0.58
CTCFP49711 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTCFP49711 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTCFP49711 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTCFP49711 AC134312.5-201ENST00000568031 1313 ntBASIC18.65■□□□□ 0.58
CTCFP49711 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.65■□□□□ 0.58
CTCFP49711 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTCFP49711 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTCFP49711 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTCFP49711 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CTCFP49711 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CTCFP49711 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CTCFP49711 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTCFP49711 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.64■□□□□ 0.58
CTCFP49711 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CTCFP49711 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.64■□□□□ 0.58
CTCFP49711 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CTCFP49711 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTCFP49711 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTCFP49711 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTCFP49711 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CTCFP49711 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CTCFP49711 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTCFP49711 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CTCFP49711 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CTCFP49711 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC18.64■□□□□ 0.57
CTCFP49711 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTCFP49711 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC18.64■□□□□ 0.57
CTCFP49711 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
CTCFP49711 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
CTCFP49711 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
CTCFP49711 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTCFP49711 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTCFP49711 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC18.64■□□□□ 0.57
CTCFP49711 AC012441.1-201ENST00000446669 685 ntBASIC18.64■□□□□ 0.57
CTCFP49711 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
CTCFP49711 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC18.64■□□□□ 0.57
CTCFP49711 AHRR-211ENST00000515206 462 ntTSL 5 BASIC18.64■□□□□ 0.57
CTCFP49711 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC18.64■□□□□ 0.57
CTCFP49711 MIR3907-201ENST00000579424 151 ntBASIC18.64■□□□□ 0.57
CTCFP49711 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC18.64■□□□□ 0.57
CTCFP49711 BRI3BPP1-201ENST00000594224 787 ntBASIC18.64■□□□□ 0.57
CTCFP49711 AL049840.4-201ENST00000602422 811 ntBASIC18.64■□□□□ 0.57
CTCFP49711 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC18.64■□□□□ 0.57
CTCFP49711 AL391069.4-201ENST00000609583 481 ntBASIC18.64■□□□□ 0.57
CTCFP49711 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC18.64■□□□□ 0.57
CTCFP49711 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC18.64■□□□□ 0.57
CTCFP49711 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC18.64■□□□□ 0.57
CTCFP49711 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC18.64■□□□□ 0.57
CTCFP49711 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC18.64■□□□□ 0.57
CTCFP49711 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CTCFP49711 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTCFP49711 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTCFP49711 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CTCFP49711 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.64■□□□□ 0.57
CTCFP49711 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTCFP49711 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.64■□□□□ 0.57
CTCFP49711 AMT-232ENST00000636199 1546 ntTSL 5 BASIC18.64■□□□□ 0.57
CTCFP49711 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CTCFP49711 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTCFP49711 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTCFP49711 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CTCFP49711 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CTCFP49711 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.63■□□□□ 0.57
CTCFP49711 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
CTCFP49711 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTCFP49711 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTCFP49711 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTCFP49711 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC18.63■□□□□ 0.57
CTCFP49711 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTCFP49711 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTCFP49711 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CTCFP49711 MIR769-201ENST00000390225 118 ntBASIC18.63■□□□□ 0.57
CTCFP49711 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CTCFP49711 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
CTCFP49711 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC18.63■□□□□ 0.57
CTCFP49711 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms