Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HNF4AP41235 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC15.77■□□□□ 0.12
HNF4AP41235 RPP21-221ENST00000428040 594 ntTSL 2 BASIC15.77■□□□□ 0.12
HNF4AP41235 AL671277.1-201ENST00000429656 993 ntBASIC15.77■□□□□ 0.12
HNF4AP41235 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HNF4AP41235 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.77■□□□□ 0.12
HNF4AP41235 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
HNF4AP41235 MIR3687-2-201ENST00000577708 61 ntBASIC15.77■□□□□ 0.12
HNF4AP41235 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.77■□□□□ 0.12
HNF4AP41235 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HNF4AP41235 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.77■□□□□ 0.12
HNF4AP41235 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC15.77■□□□□ 0.12
HNF4AP41235 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC15.77■□□□□ 0.12
HNF4AP41235 AL365330.1-201ENST00000607459 531 ntBASIC15.77■□□□□ 0.12
HNF4AP41235 MIR3687-1-201ENST00000614492 61 ntBASIC15.77■□□□□ 0.12
HNF4AP41235 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.77■□□□□ 0.12
HNF4AP41235 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HNF4AP41235 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.77■□□□□ 0.12
HNF4AP41235 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
HNF4AP41235 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
HNF4AP41235 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
HNF4AP41235 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.77■□□□□ 0.11
HNF4AP41235 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
HNF4AP41235 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
HNF4AP41235 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
HNF4AP41235 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
HNF4AP41235 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC15.77■□□□□ 0.11
HNF4AP41235 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
HNF4AP41235 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
HNF4AP41235 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
HNF4AP41235 AC073439.1-201ENST00000624121 1774 ntBASIC15.77■□□□□ 0.11
HNF4AP41235 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC15.77■□□□□ 0.11
HNF4AP41235 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC15.77■□□□□ 0.11
HNF4AP41235 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC15.77■□□□□ 0.11
HNF4AP41235 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
HNF4AP41235 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
HNF4AP41235 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC15.77■□□□□ 0.11
HNF4AP41235 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC15.77■□□□□ 0.11
HNF4AP41235 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
HNF4AP41235 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
HNF4AP41235 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
HNF4AP41235 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.77■□□□□ 0.11
HNF4AP41235 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HNF4AP41235 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC15.76■□□□□ 0.11
HNF4AP41235 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
HNF4AP41235 HYMAI-201ENST00000635591 3347 ntBASIC15.76■□□□□ 0.11
HNF4AP41235 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC15.76■□□□□ 0.11
HNF4AP41235 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC15.76■□□□□ 0.11
HNF4AP41235 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC15.76■□□□□ 0.11
HNF4AP41235 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HNF4AP41235 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HNF4AP41235 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HNF4AP41235 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HNF4AP41235 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.76■□□□□ 0.11
HNF4AP41235 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
HNF4AP41235 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HNF4AP41235 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HNF4AP41235 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HNF4AP41235 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HNF4AP41235 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
HNF4AP41235 DNAJB3-201ENST00000446806 729 ntBASIC15.76■□□□□ 0.11
HNF4AP41235 AC112482.1-201ENST00000492080 688 ntBASIC15.76■□□□□ 0.11
HNF4AP41235 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC15.76■□□□□ 0.11
HNF4AP41235 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.76■□□□□ 0.11
HNF4AP41235 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC15.76■□□□□ 0.11
HNF4AP41235 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HNF4AP41235 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.76■□□□□ 0.11
HNF4AP41235 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
HNF4AP41235 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.76■□□□□ 0.11
HNF4AP41235 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.76■□□□□ 0.11
HNF4AP41235 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
HNF4AP41235 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.76■□□□□ 0.11
HNF4AP41235 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
HNF4AP41235 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HNF4AP41235 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC15.76■□□□□ 0.11
HNF4AP41235 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
HNF4AP41235 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
HNF4AP41235 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HNF4AP41235 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HNF4AP41235 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HNF4AP41235 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.76■□□□□ 0.11
HNF4AP41235 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
HNF4AP41235 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HNF4AP41235 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HNF4AP41235 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HNF4AP41235 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
HNF4AP41235 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HNF4AP41235 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
HNF4AP41235 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC15.75■□□□□ 0.11
HNF4AP41235 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HNF4AP41235 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
HNF4AP41235 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HNF4AP41235 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
HNF4AP41235 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC15.75■□□□□ 0.11
HNF4AP41235 CEND1P1-201ENST00000451006 455 ntBASIC15.75■□□□□ 0.11
HNF4AP41235 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC15.75■□□□□ 0.11
HNF4AP41235 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.75■□□□□ 0.11
HNF4AP41235 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HNF4AP41235 AC005829.1-201ENST00000570002 483 ntBASIC15.75■□□□□ 0.11
HNF4AP41235 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms