Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLPTM1O96005 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
CLPTM1O96005 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLPTM1O96005 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CLPTM1O96005 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLPTM1O96005 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC15.39■□□□□ 0.05
CLPTM1O96005 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC15.39■□□□□ 0.05
CLPTM1O96005 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CLPTM1O96005 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC15.39■□□□□ 0.05
CLPTM1O96005 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLPTM1O96005 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLPTM1O96005 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CLPTM1O96005 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLPTM1O96005 AC232323.1-201ENST00000540724 2099 ntBASIC15.39■□□□□ 0.05
CLPTM1O96005 REXO1L5P-201ENST00000622260 2098 ntBASIC15.39■□□□□ 0.05
CLPTM1O96005 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
CLPTM1O96005 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLPTM1O96005 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLPTM1O96005 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
CLPTM1O96005 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLPTM1O96005 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLPTM1O96005 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLPTM1O96005 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLPTM1O96005 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC15.38■□□□□ 0.05
CLPTM1O96005 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.38■□□□□ 0.05
CLPTM1O96005 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLPTM1O96005 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC15.38■□□□□ 0.05
CLPTM1O96005 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLPTM1O96005 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.38■□□□□ 0.05
CLPTM1O96005 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC15.38■□□□□ 0.05
CLPTM1O96005 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC15.38■□□□□ 0.05
CLPTM1O96005 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLPTM1O96005 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC15.38■□□□□ 0.05
CLPTM1O96005 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLPTM1O96005 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLPTM1O96005 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLPTM1O96005 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC15.38■□□□□ 0.05
CLPTM1O96005 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLPTM1O96005 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLPTM1O96005 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC15.38■□□□□ 0.05
CLPTM1O96005 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLPTM1O96005 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC15.38■□□□□ 0.05
CLPTM1O96005 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC15.38■□□□□ 0.05
CLPTM1O96005 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLPTM1O96005 VENTXP7-201ENST00000475503 772 ntBASIC15.38■□□□□ 0.05
CLPTM1O96005 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC15.38■□□□□ 0.05
CLPTM1O96005 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC15.38■□□□□ 0.05
CLPTM1O96005 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC15.38■□□□□ 0.05
CLPTM1O96005 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC15.38■□□□□ 0.05
CLPTM1O96005 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC15.38■□□□□ 0.05
CLPTM1O96005 Z69720.1-201ENST00000601483 472 ntBASIC15.38■□□□□ 0.05
CLPTM1O96005 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC15.38■□□□□ 0.05
CLPTM1O96005 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC15.38■□□□□ 0.05
CLPTM1O96005 LINC00552-201ENST00000625151 2579 ntBASIC15.38■□□□□ 0.05
CLPTM1O96005 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC15.38■□□□□ 0.05
CLPTM1O96005 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLPTM1O96005 AC079781.5-202ENST00000641784 3743 ntBASIC15.38■□□□□ 0.05
CLPTM1O96005 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLPTM1O96005 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC15.38■□□□□ 0.05
CLPTM1O96005 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC15.38■□□□□ 0.05
CLPTM1O96005 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLPTM1O96005 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
CLPTM1O96005 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.38■□□□□ 0.05
CLPTM1O96005 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLPTM1O96005 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC15.38■□□□□ 0.05
CLPTM1O96005 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
CLPTM1O96005 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLPTM1O96005 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC15.37■□□□□ 0.05
CLPTM1O96005 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLPTM1O96005 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLPTM1O96005 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLPTM1O96005 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLPTM1O96005 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLPTM1O96005 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
CLPTM1O96005 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15.37■□□□□ 0.05
CLPTM1O96005 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLPTM1O96005 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLPTM1O96005 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
CLPTM1O96005 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLPTM1O96005 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC15.37■□□□□ 0.05
CLPTM1O96005 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLPTM1O96005 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLPTM1O96005 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLPTM1O96005 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLPTM1O96005 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLPTM1O96005 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC15.37■□□□□ 0.05
CLPTM1O96005 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLPTM1O96005 KRT17P6-201ENST00000453795 1220 ntBASIC15.37■□□□□ 0.05
CLPTM1O96005 AC104819.1-201ENST00000504587 486 ntBASIC15.37■□□□□ 0.05
CLPTM1O96005 ABR-204ENST00000543210 1049 ntTSL 2 BASIC15.37■□□□□ 0.05
CLPTM1O96005 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC15.37■□□□□ 0.05
CLPTM1O96005 AC012615.1-201ENST00000565797 1299 ntBASIC15.37■□□□□ 0.05
CLPTM1O96005 ABR-217ENST00000572441 563 ntTSL 4 BASIC15.37■□□□□ 0.05
CLPTM1O96005 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC15.37■□□□□ 0.05
CLPTM1O96005 AC007686.3-201ENST00000619017 3487 ntBASIC15.37■□□□□ 0.05
CLPTM1O96005 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLPTM1O96005 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.37■□□□□ 0.05
CLPTM1O96005 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.37■□□□□ 0.05
CLPTM1O96005 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLPTM1O96005 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 318.6 ms