Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
COL6A5A8TX70 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC18.81■□□□□ 0.6
COL6A5A8TX70 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC18.81■□□□□ 0.6
COL6A5A8TX70 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A5A8TX70 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL6A5A8TX70 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL6A5A8TX70 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC18.8■□□□□ 0.6
COL6A5A8TX70 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC18.8■□□□□ 0.6
COL6A5A8TX70 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC18.8■□□□□ 0.6
COL6A5A8TX70 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC18.8■□□□□ 0.6
COL6A5A8TX70 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC18.8■□□□□ 0.6
COL6A5A8TX70 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC18.8■□□□□ 0.6
COL6A5A8TX70 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
COL6A5A8TX70 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
COL6A5A8TX70 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A5A8TX70 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A5A8TX70 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A5A8TX70 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL6A5A8TX70 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC18.79■□□□□ 0.6
COL6A5A8TX70 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC18.78■□□□□ 0.6
COL6A5A8TX70 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC18.78■□□□□ 0.6
COL6A5A8TX70 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL6A5A8TX70 GATM-206ENST00000558336 1522 ntTSL 2 BASIC18.78■□□□□ 0.6
COL6A5A8TX70 EMC9-206ENST00000560403 872 ntTSL 2 BASIC18.77■□□□□ 0.6
COL6A5A8TX70 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL6A5A8TX70 HLA-L-209ENST00000420110 1011 ntBASIC18.77■□□□□ 0.6
COL6A5A8TX70 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC18.77■□□□□ 0.6
COL6A5A8TX70 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.59
COL6A5A8TX70 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC18.77■□□□□ 0.59
COL6A5A8TX70 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC18.76■□□□□ 0.59
COL6A5A8TX70 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
COL6A5A8TX70 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
COL6A5A8TX70 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A5A8TX70 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL6A5A8TX70 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC18.75■□□□□ 0.59
COL6A5A8TX70 SYT6-210ENST00000641643 1587 ntBASIC18.75■□□□□ 0.59
COL6A5A8TX70 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
COL6A5A8TX70 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A5A8TX70 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL6A5A8TX70 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL6A5A8TX70 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL6A5A8TX70 ABCB10P3-201ENST00000561950 2166 ntBASIC18.74■□□□□ 0.59
COL6A5A8TX70 AF131216.4-201ENST00000638924 1588 ntBASIC18.74■□□□□ 0.59
COL6A5A8TX70 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL6A5A8TX70 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL6A5A8TX70 CLTA-206ENST00000466396 695 ntTSL 2 BASIC18.74■□□□□ 0.59
COL6A5A8TX70 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.74■□□□□ 0.59
COL6A5A8TX70 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL6A5A8TX70 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
COL6A5A8TX70 AC027682.1-201ENST00000562846 899 ntBASIC18.73■□□□□ 0.59
COL6A5A8TX70 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
COL6A5A8TX70 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
COL6A5A8TX70 KRT18P5-201ENST00000436075 1291 ntBASIC18.73■□□□□ 0.59
COL6A5A8TX70 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
COL6A5A8TX70 MIR4767-201ENST00000582827 78 ntBASIC18.73■□□□□ 0.59
COL6A5A8TX70 AC008764.7-201ENST00000593779 1081 ntBASIC18.73■□□□□ 0.59
COL6A5A8TX70 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC18.73■□□□□ 0.59
COL6A5A8TX70 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
COL6A5A8TX70 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC18.72■□□□□ 0.59
COL6A5A8TX70 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC18.72■□□□□ 0.59
COL6A5A8TX70 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL6A5A8TX70 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.72■□□□□ 0.59
COL6A5A8TX70 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC18.72■□□□□ 0.59
COL6A5A8TX70 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL6A5A8TX70 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL6A5A8TX70 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL6A5A8TX70 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL6A5A8TX70 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL6A5A8TX70 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC18.71■□□□□ 0.59
COL6A5A8TX70 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL6A5A8TX70 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL6A5A8TX70 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL6A5A8TX70 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL6A5A8TX70 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL6A5A8TX70 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A5A8TX70 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC18.7■□□□□ 0.58
COL6A5A8TX70 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.7■□□□□ 0.58
COL6A5A8TX70 AL031602.1-201ENST00000633169 911 ntBASIC18.7■□□□□ 0.58
COL6A5A8TX70 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A5A8TX70 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
COL6A5A8TX70 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL6A5A8TX70 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
COL6A5A8TX70 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC18.7■□□□□ 0.58
COL6A5A8TX70 DUX4L2-201ENST00000561772 1275 ntBASIC18.7■□□□□ 0.58
COL6A5A8TX70 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC18.7■□□□□ 0.58
COL6A5A8TX70 DUX4L6-201ENST00000626483 1275 ntBASIC18.7■□□□□ 0.58
COL6A5A8TX70 DUX4L1-201ENST00000627662 1275 ntBASIC18.7■□□□□ 0.58
COL6A5A8TX70 DUX4L8-201ENST00000629013 1275 ntBASIC18.7■□□□□ 0.58
COL6A5A8TX70 DUX4L3-201ENST00000630187 1275 ntBASIC18.7■□□□□ 0.58
COL6A5A8TX70 DUX4L7-201ENST00000630678 1275 ntBASIC18.7■□□□□ 0.58
COL6A5A8TX70 DUX4L5-201ENST00000630834 1275 ntBASIC18.7■□□□□ 0.58
COL6A5A8TX70 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC18.69■□□□□ 0.58
COL6A5A8TX70 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
COL6A5A8TX70 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A5A8TX70 SP2-202ENST00000613139 908 ntTSL 5 BASIC18.69■□□□□ 0.58
COL6A5A8TX70 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
COL6A5A8TX70 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A5A8TX70 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A5A8TX70 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A5A8TX70 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms