Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
USP54Q70EL1 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USP54Q70EL1 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
USP54Q70EL1 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
USP54Q70EL1 AL133338.1-201ENST00000565695 1517 ntBASIC21.12■□□□□ 0.97
USP54Q70EL1 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
USP54Q70EL1 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC21.12■□□□□ 0.97
USP54Q70EL1 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC21.12■□□□□ 0.97
USP54Q70EL1 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
USP54Q70EL1 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC21.12■□□□□ 0.97
USP54Q70EL1 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC21.12■□□□□ 0.97
USP54Q70EL1 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC21.12■□□□□ 0.97
USP54Q70EL1 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC21.12■□□□□ 0.97
USP54Q70EL1 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC21.12■□□□□ 0.97
USP54Q70EL1 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC21.12■□□□□ 0.97
USP54Q70EL1 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
USP54Q70EL1 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
USP54Q70EL1 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC21.11■□□□□ 0.97
USP54Q70EL1 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
USP54Q70EL1 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
USP54Q70EL1 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC21.11■□□□□ 0.97
USP54Q70EL1 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
USP54Q70EL1 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
USP54Q70EL1 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
USP54Q70EL1 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
USP54Q70EL1 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC21.11■□□□□ 0.97
USP54Q70EL1 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC21.11■□□□□ 0.97
USP54Q70EL1 YBX1P6-201ENST00000442962 1002 ntBASIC21.11■□□□□ 0.97
USP54Q70EL1 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
USP54Q70EL1 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC21.11■□□□□ 0.97
USP54Q70EL1 EMC4-209ENST00000559421 497 ntTSL 2 BASIC21.11■□□□□ 0.97
USP54Q70EL1 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
USP54Q70EL1 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC21.11■□□□□ 0.97
USP54Q70EL1 AC008687.7-202ENST00000637404 953 ntBASIC21.11■□□□□ 0.97
USP54Q70EL1 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
USP54Q70EL1 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
USP54Q70EL1 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
USP54Q70EL1 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
USP54Q70EL1 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
USP54Q70EL1 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
USP54Q70EL1 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC21.1■□□□□ 0.97
USP54Q70EL1 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC21.1■□□□□ 0.97
USP54Q70EL1 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.1■□□□□ 0.97
USP54Q70EL1 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC21.1■□□□□ 0.97
USP54Q70EL1 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP54Q70EL1 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP54Q70EL1 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
USP54Q70EL1 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP54Q70EL1 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC21.1■□□□□ 0.97
USP54Q70EL1 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP54Q70EL1 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP54Q70EL1 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
USP54Q70EL1 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP54Q70EL1 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
USP54Q70EL1 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
USP54Q70EL1 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC21.1■□□□□ 0.97
USP54Q70EL1 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC21.1■□□□□ 0.97
USP54Q70EL1 RPL8-205ENST00000527914 551 ntTSL 3 BASIC21.1■□□□□ 0.97
USP54Q70EL1 RN7SL560P-201ENST00000577943 264 ntBASIC21.1■□□□□ 0.97
USP54Q70EL1 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC21.1■□□□□ 0.97
USP54Q70EL1 AC005695.3-201ENST00000614522 232 ntBASIC21.1■□□□□ 0.97
USP54Q70EL1 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
USP54Q70EL1 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP54Q70EL1 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC21.1■□□□□ 0.97
USP54Q70EL1 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC21.1■□□□□ 0.97
USP54Q70EL1 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
USP54Q70EL1 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP54Q70EL1 AC069224.1-201ENST00000566372 1715 ntBASIC21.1■□□□□ 0.97
USP54Q70EL1 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP54Q70EL1 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP54Q70EL1 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC21.1■□□□□ 0.97
USP54Q70EL1 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP54Q70EL1 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP54Q70EL1 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
USP54Q70EL1 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC21.09■□□□□ 0.97
USP54Q70EL1 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USP54Q70EL1 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USP54Q70EL1 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC21.09■□□□□ 0.97
USP54Q70EL1 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
USP54Q70EL1 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC21.09■□□□□ 0.97
USP54Q70EL1 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
USP54Q70EL1 IGHV3OR16-16-201ENST00000563644 343 ntBASIC21.09■□□□□ 0.97
USP54Q70EL1 SNX12-206ENST00000622259 661 ntTSL 5 BASIC21.09■□□□□ 0.97
USP54Q70EL1 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
USP54Q70EL1 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC21.09■□□□□ 0.97
USP54Q70EL1 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
USP54Q70EL1 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
USP54Q70EL1 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC21.09■□□□□ 0.97
USP54Q70EL1 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
USP54Q70EL1 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USP54Q70EL1 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
USP54Q70EL1 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
USP54Q70EL1 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USP54Q70EL1 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
USP54Q70EL1 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
USP54Q70EL1 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
USP54Q70EL1 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
USP54Q70EL1 CNN2P10-201ENST00000443067 918 ntBASIC21.09■□□□□ 0.97
USP54Q70EL1 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC21.09■□□□□ 0.97
USP54Q70EL1 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms