Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CIITAP33076 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC18.2■□□□□ 0.5
CIITAP33076 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CIITAP33076 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC18.2■□□□□ 0.5
CIITAP33076 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CIITAP33076 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
CIITAP33076 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC18.2■□□□□ 0.5
CIITAP33076 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CIITAP33076 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CIITAP33076 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CIITAP33076 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
CIITAP33076 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CIITAP33076 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC18.2■□□□□ 0.5
CIITAP33076 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC18.2■□□□□ 0.5
CIITAP33076 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
CIITAP33076 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CIITAP33076 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CIITAP33076 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC18.19■□□□□ 0.5
CIITAP33076 PCDH8P1-201ENST00000428983 2773 ntBASIC18.19■□□□□ 0.5
CIITAP33076 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CIITAP33076 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC18.19■□□□□ 0.5
CIITAP33076 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CIITAP33076 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CIITAP33076 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CIITAP33076 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC18.19■□□□□ 0.5
CIITAP33076 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CIITAP33076 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CIITAP33076 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC18.19■□□□□ 0.5
CIITAP33076 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.19■□□□□ 0.5
CIITAP33076 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CIITAP33076 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.19■□□□□ 0.5
CIITAP33076 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC18.19■□□□□ 0.5
CIITAP33076 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC18.19■□□□□ 0.5
CIITAP33076 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CIITAP33076 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
CIITAP33076 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CIITAP33076 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC18.19■□□□□ 0.5
CIITAP33076 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CIITAP33076 MRPS18AP1-201ENST00000414458 589 ntBASIC18.19■□□□□ 0.5
CIITAP33076 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC18.19■□□□□ 0.5
CIITAP33076 PTK7-212ENST00000476760 902 ntTSL 2 BASIC18.19■□□□□ 0.5
CIITAP33076 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CIITAP33076 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC18.19■□□□□ 0.5
CIITAP33076 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC18.19■□□□□ 0.5
CIITAP33076 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CIITAP33076 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
CIITAP33076 AC010336.2-201ENST00000564226 506 ntBASIC18.19■□□□□ 0.5
CIITAP33076 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC18.19■□□□□ 0.5
CIITAP33076 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC18.19■□□□□ 0.5
CIITAP33076 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC18.19■□□□□ 0.5
CIITAP33076 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CIITAP33076 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CIITAP33076 AJ011932.1-201ENST00000621707 465 ntBASIC18.19■□□□□ 0.5
CIITAP33076 OR6D1P-203ENST00000641209 4860 ntBASIC18.19■□□□□ 0.5
CIITAP33076 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC18.19■□□□□ 0.5
CIITAP33076 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CIITAP33076 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CIITAP33076 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC18.19■□□□□ 0.5
CIITAP33076 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CIITAP33076 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
CIITAP33076 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CIITAP33076 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CIITAP33076 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CIITAP33076 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
CIITAP33076 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CIITAP33076 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC18.18■□□□□ 0.5
CIITAP33076 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC18.18■□□□□ 0.5
CIITAP33076 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC18.18■□□□□ 0.5
CIITAP33076 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CIITAP33076 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CIITAP33076 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC18.18■□□□□ 0.5
CIITAP33076 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CIITAP33076 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CIITAP33076 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC18.18■□□□□ 0.5
CIITAP33076 HNRNPA3P1-201ENST00000401429 1139 ntBASIC18.18■□□□□ 0.5
CIITAP33076 HNRNPA3P5-201ENST00000455201 833 ntBASIC18.18■□□□□ 0.5
CIITAP33076 SERBP1P3-201ENST00000459980 809 ntBASIC18.18■□□□□ 0.5
CIITAP33076 FXR1-221ENST00000491674 365 ntTSL 2 BASIC18.18■□□□□ 0.5
CIITAP33076 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC18.18■□□□□ 0.5
CIITAP33076 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC18.18■□□□□ 0.5
CIITAP33076 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CIITAP33076 AC009407.1-201ENST00000568958 598 ntBASIC18.18■□□□□ 0.5
CIITAP33076 NAA60-208ENST00000570819 833 ntTSL 2 BASIC18.18■□□□□ 0.5
CIITAP33076 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC18.18■□□□□ 0.5
CIITAP33076 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC18.18■□□□□ 0.5
CIITAP33076 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC18.18■□□□□ 0.5
CIITAP33076 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CIITAP33076 AC134407.2-201ENST00000625089 1978 ntBASIC18.18■□□□□ 0.5
CIITAP33076 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC18.18■□□□□ 0.5
CIITAP33076 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC18.18■□□□□ 0.5
CIITAP33076 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CIITAP33076 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC18.18■□□□□ 0.5
CIITAP33076 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
CIITAP33076 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC18.18■□□□□ 0.5
CIITAP33076 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CIITAP33076 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC18.18■□□□□ 0.5
CIITAP33076 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CIITAP33076 AC069224.1-201ENST00000566372 1715 ntBASIC18.18■□□□□ 0.5
CIITAP33076 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
CIITAP33076 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms