Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 SPDYE14P-201ENST00000442619 822 ntBASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 AP003680.1-201ENST00000598970 3660 ntBASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SHROOM3Q8TF72 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM3Q8TF72 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM3Q8TF72 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.5■□□□□ 0.23
SHROOM3Q8TF72 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM3Q8TF72 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
SHROOM3Q8TF72 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC16.5■□□□□ 0.23
SHROOM3Q8TF72 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM3Q8TF72 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM3Q8TF72 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.5■□□□□ 0.23
SHROOM3Q8TF72 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM3Q8TF72 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.5■□□□□ 0.23
SHROOM3Q8TF72 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.5■□□□□ 0.23
SHROOM3Q8TF72 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM3Q8TF72 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.5■□□□□ 0.23
SHROOM3Q8TF72 CDC14C-201ENST00000428251 1719 ntBASIC16.5■□□□□ 0.23
SHROOM3Q8TF72 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM3Q8TF72 PRAL-201ENST00000624952 3286 ntBASIC16.5■□□□□ 0.23
SHROOM3Q8TF72 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM3Q8TF72 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM3Q8TF72 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.5■□□□□ 0.23
SHROOM3Q8TF72 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM3Q8TF72 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.5■□□□□ 0.23
SHROOM3Q8TF72 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM3Q8TF72 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM3Q8TF72 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM3Q8TF72 AC134407.2-201ENST00000625089 1978 ntBASIC16.5■□□□□ 0.23
SHROOM3Q8TF72 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SHROOM3Q8TF72 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 AC005237.2-201ENST00000434368 219 ntBASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 BCL2-203ENST00000589955 5011 ntBASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 OR8S1-201ENST00000310194 1080 ntBASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 RBPMS2P1-201ENST00000437762 623 ntBASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 MTND6P24-201ENST00000440466 518 ntBASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 AC245100.3-201ENST00000441281 285 ntBASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
SHROOM3Q8TF72 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms