Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.89■□□□□ 0.29
EPHB3P54753 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.89■□□□□ 0.29
EPHB3P54753 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.89■□□□□ 0.29
EPHB3P54753 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
EPHB3P54753 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
EPHB3P54753 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
EPHB3P54753 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
EPHB3P54753 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
EPHB3P54753 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
EPHB3P54753 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC16.88■□□□□ 0.29
EPHB3P54753 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.88■□□□□ 0.29
EPHB3P54753 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
EPHB3P54753 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.88■□□□□ 0.29
EPHB3P54753 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
EPHB3P54753 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
EPHB3P54753 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
EPHB3P54753 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
EPHB3P54753 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
EPHB3P54753 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
EPHB3P54753 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
EPHB3P54753 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
EPHB3P54753 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
EPHB3P54753 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
EPHB3P54753 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
EPHB3P54753 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
EPHB3P54753 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
EPHB3P54753 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC16.88■□□□□ 0.29
EPHB3P54753 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.88■□□□□ 0.29
EPHB3P54753 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.88■□□□□ 0.29
EPHB3P54753 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
EPHB3P54753 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC16.88■□□□□ 0.29
EPHB3P54753 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC16.88■□□□□ 0.29
EPHB3P54753 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC16.88■□□□□ 0.29
EPHB3P54753 ELP6-209ENST00000446787 894 ntTSL 3 BASIC16.88■□□□□ 0.29
EPHB3P54753 RN7SL752P-201ENST00000463779 287 ntBASIC16.88■□□□□ 0.29
EPHB3P54753 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC16.88■□□□□ 0.29
EPHB3P54753 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC16.88■□□□□ 0.29
EPHB3P54753 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC16.88■□□□□ 0.29
EPHB3P54753 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
EPHB3P54753 SUOX-214ENST00000551841 906 ntTSL 3 BASIC16.88■□□□□ 0.29
EPHB3P54753 AC023310.3-201ENST00000557027 670 ntBASIC16.88■□□□□ 0.29
EPHB3P54753 AC100756.1-201ENST00000562736 682 ntBASIC16.88■□□□□ 0.29
EPHB3P54753 AC138749.3-201ENST00000567691 622 ntBASIC16.88■□□□□ 0.29
EPHB3P54753 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
EPHB3P54753 SPIB-207ENST00000597855 564 ntTSL 4 BASIC16.88■□□□□ 0.29
EPHB3P54753 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
EPHB3P54753 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
EPHB3P54753 AC116165.1-201ENST00000611806 668 ntBASIC16.88■□□□□ 0.29
EPHB3P54753 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC16.88■□□□□ 0.29
EPHB3P54753 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
EPHB3P54753 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
EPHB3P54753 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
EPHB3P54753 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
EPHB3P54753 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
EPHB3P54753 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
EPHB3P54753 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
EPHB3P54753 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.88■□□□□ 0.29
EPHB3P54753 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
EPHB3P54753 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
EPHB3P54753 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
EPHB3P54753 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
EPHB3P54753 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
EPHB3P54753 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
EPHB3P54753 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
EPHB3P54753 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
EPHB3P54753 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
EPHB3P54753 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
EPHB3P54753 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC16.87■□□□□ 0.29
EPHB3P54753 HIST3H2BA-201ENST00000436555 524 ntBASIC16.87■□□□□ 0.29
EPHB3P54753 AC011495.1-201ENST00000498085 584 ntBASIC16.87■□□□□ 0.29
EPHB3P54753 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC16.87■□□□□ 0.29
EPHB3P54753 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
EPHB3P54753 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC16.87■□□□□ 0.29
EPHB3P54753 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
EPHB3P54753 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC16.87■□□□□ 0.29
EPHB3P54753 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC16.87■□□□□ 0.29
EPHB3P54753 AC025048.3-201ENST00000590609 569 ntBASIC16.87■□□□□ 0.29
EPHB3P54753 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC16.87■□□□□ 0.29
EPHB3P54753 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC16.87■□□□□ 0.29
EPHB3P54753 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
EPHB3P54753 AC005702.4-201ENST00000618393 416 ntBASIC16.87■□□□□ 0.29
EPHB3P54753 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
EPHB3P54753 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
EPHB3P54753 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
EPHB3P54753 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
EPHB3P54753 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
EPHB3P54753 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
EPHB3P54753 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
EPHB3P54753 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.87■□□□□ 0.29
EPHB3P54753 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
EPHB3P54753 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.87■□□□□ 0.29
EPHB3P54753 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
EPHB3P54753 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
EPHB3P54753 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.87■□□□□ 0.29
EPHB3P54753 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
EPHB3P54753 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
EPHB3P54753 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
EPHB3P54753 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.87■□□□□ 0.29
EPHB3P54753 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
EPHB3P54753 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms