Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL12A1Q99715 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
COL12A1Q99715 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL12A1Q99715 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
COL12A1Q99715 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
COL12A1Q99715 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
COL12A1Q99715 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.18
COL12A1Q99715 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
COL12A1Q99715 CD8B2-202ENST00000417670 633 ntBASIC13.96□□□□□ -0.18
COL12A1Q99715 DEF8-202ENST00000418391 852 ntTSL 2 BASIC13.96□□□□□ -0.18
COL12A1Q99715 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC13.96□□□□□ -0.18
COL12A1Q99715 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
COL12A1Q99715 AC126915.1-201ENST00000522847 1038 ntBASIC13.96□□□□□ -0.18
COL12A1Q99715 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
COL12A1Q99715 AC009053.2-201ENST00000563701 2365 ntBASIC13.96□□□□□ -0.18
COL12A1Q99715 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC13.96□□□□□ -0.18
COL12A1Q99715 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
COL12A1Q99715 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL12A1Q99715 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL12A1Q99715 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL12A1Q99715 AL031731.1-201ENST00000642131 2094 ntBASIC13.95□□□□□ -0.18
COL12A1Q99715 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL12A1Q99715 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL12A1Q99715 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL12A1Q99715 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC13.95□□□□□ -0.18
COL12A1Q99715 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL12A1Q99715 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL12A1Q99715 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL12A1Q99715 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC13.95□□□□□ -0.18
COL12A1Q99715 AL596276.2-201ENST00000447525 331 ntBASIC13.95□□□□□ -0.18
COL12A1Q99715 AP001527.2-201ENST00000614441 631 ntBASIC13.95□□□□□ -0.18
COL12A1Q99715 AP001065.2-201ENST00000617205 644 ntBASIC13.95□□□□□ -0.18
COL12A1Q99715 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC13.95□□□□□ -0.18
COL12A1Q99715 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL12A1Q99715 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC13.95□□□□□ -0.18
COL12A1Q99715 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC13.95□□□□□ -0.18
COL12A1Q99715 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC13.95□□□□□ -0.18
COL12A1Q99715 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL12A1Q99715 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
COL12A1Q99715 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL12A1Q99715 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
COL12A1Q99715 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL12A1Q99715 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL12A1Q99715 GUK1-206ENST00000366723 845 ntTSL 5 BASIC13.95□□□□□ -0.18
COL12A1Q99715 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL12A1Q99715 MSRA-203ENST00000441698 788 ntTSL 2 BASIC13.95□□□□□ -0.18
COL12A1Q99715 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC13.95□□□□□ -0.18
COL12A1Q99715 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC13.95□□□□□ -0.18
COL12A1Q99715 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
COL12A1Q99715 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC13.95□□□□□ -0.18
COL12A1Q99715 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC13.95□□□□□ -0.18
COL12A1Q99715 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC13.95□□□□□ -0.18
COL12A1Q99715 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC13.95□□□□□ -0.18
COL12A1Q99715 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL12A1Q99715 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL12A1Q99715 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL12A1Q99715 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL12A1Q99715 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC13.95□□□□□ -0.18
COL12A1Q99715 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL12A1Q99715 AP003680.1-201ENST00000598970 3660 ntBASIC13.95□□□□□ -0.18
COL12A1Q99715 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
COL12A1Q99715 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC13.94□□□□□ -0.18
COL12A1Q99715 AC134915.1-201ENST00000426461 574 ntBASIC13.94□□□□□ -0.18
COL12A1Q99715 POM121L10P-201ENST00000436994 1285 ntBASIC13.94□□□□□ -0.18
COL12A1Q99715 CEP164P1-201ENST00000455142 418 ntBASIC13.94□□□□□ -0.18
COL12A1Q99715 AHRR-211ENST00000515206 462 ntTSL 5 BASIC13.94□□□□□ -0.18
COL12A1Q99715 HNRNPA1P48-202ENST00000565308 961 ntBASIC13.94□□□□□ -0.18
COL12A1Q99715 BRI3BPP1-201ENST00000594224 787 ntBASIC13.94□□□□□ -0.18
COL12A1Q99715 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
COL12A1Q99715 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
COL12A1Q99715 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
COL12A1Q99715 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC13.94□□□□□ -0.18
COL12A1Q99715 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
COL12A1Q99715 AC005052.1-201ENST00000625181 2492 ntBASIC13.94□□□□□ -0.18
COL12A1Q99715 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC13.94□□□□□ -0.18
COL12A1Q99715 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
COL12A1Q99715 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL12A1Q99715 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL12A1Q99715 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
COL12A1Q99715 AR-207ENST00000612010 3896 ntTSL 5 BASIC13.94□□□□□ -0.18
COL12A1Q99715 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL12A1Q99715 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL12A1Q99715 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL12A1Q99715 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL12A1Q99715 AC116353.5-201ENST00000638148 1699 ntBASIC13.94□□□□□ -0.18
COL12A1Q99715 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL12A1Q99715 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL12A1Q99715 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL12A1Q99715 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC13.94□□□□□ -0.18
COL12A1Q99715 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
COL12A1Q99715 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC13.94□□□□□ -0.18
COL12A1Q99715 AL139010.1-201ENST00000454878 894 ntBASIC13.94□□□□□ -0.18
COL12A1Q99715 RN7SL8P-201ENST00000461771 266 ntBASIC13.94□□□□□ -0.18
COL12A1Q99715 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL12A1Q99715 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
COL12A1Q99715 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC13.94□□□□□ -0.18
COL12A1Q99715 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC13.94□□□□□ -0.18
COL12A1Q99715 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
COL12A1Q99715 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL12A1Q99715 AL645728.1-201ENST00000366221 2101 ntBASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms