Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC16.53■□□□□ 0.24
VCANP13611 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.52■□□□□ 0.24
VCANP13611 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.52■□□□□ 0.24
VCANP13611 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
VCANP13611 CD8B2-202ENST00000417670 633 ntBASIC16.52■□□□□ 0.24
VCANP13611 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC16.52■□□□□ 0.24
VCANP13611 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC16.52■□□□□ 0.24
VCANP13611 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC16.52■□□□□ 0.24
VCANP13611 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC16.52■□□□□ 0.24
VCANP13611 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.52■□□□□ 0.24
VCANP13611 AC008132.1-202ENST00000342005 1389 ntBASIC16.52■□□□□ 0.24
VCANP13611 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VCANP13611 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.52■□□□□ 0.24
VCANP13611 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.52■□□□□ 0.24
VCANP13611 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VCANP13611 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.24
VCANP13611 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
VCANP13611 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC16.52■□□□□ 0.24
VCANP13611 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC16.52■□□□□ 0.24
VCANP13611 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC16.52■□□□□ 0.24
VCANP13611 AC026316.1-201ENST00000398900 414 ntBASIC16.52■□□□□ 0.24
VCANP13611 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC16.52■□□□□ 0.24
VCANP13611 PTPA-218ENST00000435132 618 ntTSL 2 BASIC16.52■□□□□ 0.24
VCANP13611 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC16.52■□□□□ 0.24
VCANP13611 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC16.52■□□□□ 0.24
VCANP13611 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.24
VCANP13611 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
VCANP13611 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VCANP13611 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.52■□□□□ 0.23
VCANP13611 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
VCANP13611 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.52■□□□□ 0.23
VCANP13611 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.52■□□□□ 0.23
VCANP13611 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
VCANP13611 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VCANP13611 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.52■□□□□ 0.23
VCANP13611 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
VCANP13611 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC16.52■□□□□ 0.23
VCANP13611 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC16.52■□□□□ 0.23
VCANP13611 AC012362.1-201ENST00000434906 739 ntBASIC16.52■□□□□ 0.23
VCANP13611 FAM86LP-201ENST00000478302 853 ntBASIC16.52■□□□□ 0.23
VCANP13611 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC16.52■□□□□ 0.23
VCANP13611 RN7SL774P-201ENST00000577467 290 ntBASIC16.52■□□□□ 0.23
VCANP13611 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC16.52■□□□□ 0.23
VCANP13611 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
VCANP13611 NKG7-204ENST00000595217 816 ntTSL 2 BASIC16.52■□□□□ 0.23
VCANP13611 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC16.52■□□□□ 0.23
VCANP13611 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
VCANP13611 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.23
VCANP13611 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
VCANP13611 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC16.51■□□□□ 0.23
VCANP13611 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
VCANP13611 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC16.51■□□□□ 0.23
VCANP13611 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VCANP13611 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
VCANP13611 GUK1-206ENST00000366723 845 ntTSL 5 BASIC16.51■□□□□ 0.23
VCANP13611 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VCANP13611 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC16.51■□□□□ 0.23
VCANP13611 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.51■□□□□ 0.23
VCANP13611 RNF146-211ENST00000609447 607 ntTSL 4 BASIC16.51■□□□□ 0.23
VCANP13611 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.51■□□□□ 0.23
VCANP13611 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VCANP13611 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC16.51■□□□□ 0.23
VCANP13611 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VCANP13611 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.51■□□□□ 0.23
VCANP13611 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
VCANP13611 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.51■□□□□ 0.23
VCANP13611 AC098935.1-201ENST00000446057 611 ntBASIC16.51■□□□□ 0.23
VCANP13611 DNM1P30-201ENST00000563586 452 ntBASIC16.51■□□□□ 0.23
VCANP13611 SPIB-207ENST00000597855 564 ntTSL 4 BASIC16.51■□□□□ 0.23
VCANP13611 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.51■□□□□ 0.23
VCANP13611 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VCANP13611 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VCANP13611 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC16.51■□□□□ 0.23
VCANP13611 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.51■□□□□ 0.23
VCANP13611 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VCANP13611 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
VCANP13611 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VCANP13611 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VCANP13611 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.51■□□□□ 0.23
VCANP13611 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
VCANP13611 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
VCANP13611 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.51■□□□□ 0.23
VCANP13611 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC16.51■□□□□ 0.23
VCANP13611 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC16.51■□□□□ 0.23
VCANP13611 AC012618.1-201ENST00000461223 412 ntBASIC16.51■□□□□ 0.23
VCANP13611 AC078819.1-201ENST00000547454 765 ntBASIC16.51■□□□□ 0.23
VCANP13611 AC012085.1-201ENST00000548270 765 ntBASIC16.51■□□□□ 0.23
VCANP13611 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC16.51■□□□□ 0.23
VCANP13611 ETV2-207ENST00000619399 994 ntTSL 5 BASIC16.51■□□□□ 0.23
VCANP13611 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCANP13611 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCANP13611 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCANP13611 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCANP13611 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCANP13611 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.5■□□□□ 0.23
VCANP13611 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCANP13611 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCANP13611 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
VCANP13611 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCANP13611 CMC1-204ENST00000423894 549 ntTSL 2 BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms