Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 RAB34-224ENST00000636513 888 ntTSL 5 BASIC17.35■□□□□ 0.37
CISHQ9NSE2 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CISHQ9NSE2 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CISHQ9NSE2 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
CISHQ9NSE2 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CISHQ9NSE2 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CISHQ9NSE2 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
CISHQ9NSE2 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
CISHQ9NSE2 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CISHQ9NSE2 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC17.35■□□□□ 0.37
CISHQ9NSE2 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
CISHQ9NSE2 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CISHQ9NSE2 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CISHQ9NSE2 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC17.35■□□□□ 0.37
CISHQ9NSE2 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CISHQ9NSE2 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CISHQ9NSE2 AC018695.7-201ENST00000624587 2492 ntBASIC17.35■□□□□ 0.37
CISHQ9NSE2 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CISHQ9NSE2 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CISHQ9NSE2 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CISHQ9NSE2 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CISHQ9NSE2 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CISHQ9NSE2 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CISHQ9NSE2 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
CISHQ9NSE2 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
CISHQ9NSE2 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CISHQ9NSE2 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC17.34■□□□□ 0.37
CISHQ9NSE2 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CISHQ9NSE2 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
CISHQ9NSE2 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.34■□□□□ 0.37
CISHQ9NSE2 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.34■□□□□ 0.37
CISHQ9NSE2 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CISHQ9NSE2 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC17.34■□□□□ 0.37
CISHQ9NSE2 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC17.34■□□□□ 0.37
CISHQ9NSE2 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CISHQ9NSE2 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CISHQ9NSE2 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
CISHQ9NSE2 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
CISHQ9NSE2 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CISHQ9NSE2 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CISHQ9NSE2 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CISHQ9NSE2 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC17.34■□□□□ 0.37
CISHQ9NSE2 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CISHQ9NSE2 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CISHQ9NSE2 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
CISHQ9NSE2 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CISHQ9NSE2 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CISHQ9NSE2 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CISHQ9NSE2 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CISHQ9NSE2 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CISHQ9NSE2 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
CISHQ9NSE2 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.33■□□□□ 0.37
CISHQ9NSE2 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.37
CISHQ9NSE2 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CISHQ9NSE2 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC17.33■□□□□ 0.37
CISHQ9NSE2 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CISHQ9NSE2 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC17.33■□□□□ 0.37
CISHQ9NSE2 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.37
CISHQ9NSE2 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CISHQ9NSE2 LINC02199-201ENST00000506655 2702 ntBASIC17.33■□□□□ 0.36
CISHQ9NSE2 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CISHQ9NSE2 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CISHQ9NSE2 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
CISHQ9NSE2 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC17.33■□□□□ 0.36
CISHQ9NSE2 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.33■□□□□ 0.36
CISHQ9NSE2 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC17.33■□□□□ 0.36
CISHQ9NSE2 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CISHQ9NSE2 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.33■□□□□ 0.36
CISHQ9NSE2 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC17.33■□□□□ 0.36
CISHQ9NSE2 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC17.33■□□□□ 0.36
CISHQ9NSE2 GPALPP1-207ENST00000611650 899 ntBASIC17.33■□□□□ 0.36
CISHQ9NSE2 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.33■□□□□ 0.36
CISHQ9NSE2 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CISHQ9NSE2 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CISHQ9NSE2 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.33■□□□□ 0.36
CISHQ9NSE2 AC024909.3-201ENST00000611513 2257 ntBASIC17.33■□□□□ 0.36
CISHQ9NSE2 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CISHQ9NSE2 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC17.33■□□□□ 0.36
CISHQ9NSE2 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.33■□□□□ 0.36
CISHQ9NSE2 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CISHQ9NSE2 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.36
CISHQ9NSE2 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
CISHQ9NSE2 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
CISHQ9NSE2 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CISHQ9NSE2 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CISHQ9NSE2 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC17.32■□□□□ 0.36
CISHQ9NSE2 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.32■□□□□ 0.36
CISHQ9NSE2 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC17.32■□□□□ 0.36
CISHQ9NSE2 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
CISHQ9NSE2 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
CISHQ9NSE2 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CISHQ9NSE2 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CISHQ9NSE2 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CISHQ9NSE2 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC17.32■□□□□ 0.36
CISHQ9NSE2 AL603832.2-201ENST00000566195 2125 ntBASIC17.32■□□□□ 0.36
CISHQ9NSE2 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CISHQ9NSE2 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CISHQ9NSE2 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC17.32■□□□□ 0.36
CISHQ9NSE2 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CISHQ9NSE2 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms