Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN1P58418 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC14.61□□□□□ -0.07
CLRN1P58418 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC14.61□□□□□ -0.07
CLRN1P58418 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN1P58418 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN1P58418 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
CLRN1P58418 FRMD6-AS1-201ENST00000617151 2229 ntBASIC14.61□□□□□ -0.07
CLRN1P58418 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC14.61□□□□□ -0.07
CLRN1P58418 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC14.61□□□□□ -0.07
CLRN1P58418 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN1P58418 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CLRN1P58418 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC14.61□□□□□ -0.07
CLRN1P58418 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN1P58418 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
CLRN1P58418 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC14.6□□□□□ -0.07
CLRN1P58418 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN1P58418 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN1P58418 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN1P58418 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
CLRN1P58418 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC14.6□□□□□ -0.07
CLRN1P58418 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC14.6□□□□□ -0.07
CLRN1P58418 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN1P58418 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN1P58418 WASH6P-202ENST00000359512 1437 ntBASIC14.6□□□□□ -0.07
CLRN1P58418 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN1P58418 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
CLRN1P58418 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN1P58418 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN1P58418 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN1P58418 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN1P58418 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN1P58418 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
CLRN1P58418 NEK7-201ENST00000367383 586 ntTSL 2 BASIC14.6□□□□□ -0.07
CLRN1P58418 AL022342.1-201ENST00000400363 863 ntBASIC14.6□□□□□ -0.07
CLRN1P58418 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC14.6□□□□□ -0.07
CLRN1P58418 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC14.6□□□□□ -0.07
CLRN1P58418 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
CLRN1P58418 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
CLRN1P58418 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC14.6□□□□□ -0.07
CLRN1P58418 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC14.6□□□□□ -0.07
CLRN1P58418 AC092865.6-201ENST00000642101 219 ntBASIC14.6□□□□□ -0.07
CLRN1P58418 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN1P58418 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN1P58418 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC14.6□□□□□ -0.07
CLRN1P58418 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC14.6□□□□□ -0.07
CLRN1P58418 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN1P58418 PCDHA1-201ENST00000378133 2726 ntBASIC14.6□□□□□ -0.07
CLRN1P58418 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC14.6□□□□□ -0.07
CLRN1P58418 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN1P58418 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC14.6□□□□□ -0.07
CLRN1P58418 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC14.6□□□□□ -0.07
CLRN1P58418 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.6□□□□□ -0.07
CLRN1P58418 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN1P58418 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CLRN1P58418 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC14.6□□□□□ -0.07
CLRN1P58418 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC14.6□□□□□ -0.07
CLRN1P58418 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
CLRN1P58418 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN1P58418 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN1P58418 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN1P58418 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
CLRN1P58418 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN1P58418 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN1P58418 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN1P58418 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC14.59□□□□□ -0.07
CLRN1P58418 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN1P58418 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN1P58418 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC14.59□□□□□ -0.07
CLRN1P58418 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN1P58418 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
CLRN1P58418 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN1P58418 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC14.59□□□□□ -0.07
CLRN1P58418 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN1P58418 AC008741.2-201ENST00000612792 3115 ntBASIC14.59□□□□□ -0.07
CLRN1P58418 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN1P58418 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN1P58418 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN1P58418 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC14.59□□□□□ -0.07
CLRN1P58418 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
CLRN1P58418 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
CLRN1P58418 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC14.59□□□□□ -0.07
CLRN1P58418 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC14.59□□□□□ -0.07
CLRN1P58418 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
CLRN1P58418 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC14.59□□□□□ -0.07
CLRN1P58418 KRT18P58-201ENST00000527480 1120 ntBASIC14.59□□□□□ -0.07
CLRN1P58418 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC14.59□□□□□ -0.07
CLRN1P58418 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN1P58418 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
CLRN1P58418 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.59□□□□□ -0.07
CLRN1P58418 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN1P58418 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC14.59□□□□□ -0.07
CLRN1P58418 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN1P58418 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC14.59□□□□□ -0.07
CLRN1P58418 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN1P58418 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC14.59□□□□□ -0.07
CLRN1P58418 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN1P58418 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN1P58418 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN1P58418 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
CLRN1P58418 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms