Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC16.34■□□□□ 0.21
SHOX2O60902 AC140113.3-201ENST00000605663 199 ntBASIC16.34■□□□□ 0.21
SHOX2O60902 AC073592.5-201ENST00000624854 528 ntBASIC16.34■□□□□ 0.21
SHOX2O60902 MBLAC2-202ENST00000514906 1936 ntBASIC16.34■□□□□ 0.21
SHOX2O60902 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHOX2O60902 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
SHOX2O60902 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHOX2O60902 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHOX2O60902 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHOX2O60902 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.34■□□□□ 0.21
SHOX2O60902 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC16.34■□□□□ 0.21
SHOX2O60902 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.34■□□□□ 0.21
SHOX2O60902 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHOX2O60902 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC16.34■□□□□ 0.21
SHOX2O60902 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHOX2O60902 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHOX2O60902 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHOX2O60902 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHOX2O60902 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC16.34■□□□□ 0.21
SHOX2O60902 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC16.34■□□□□ 0.21
SHOX2O60902 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC16.34■□□□□ 0.21
SHOX2O60902 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHOX2O60902 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.34■□□□□ 0.21
SHOX2O60902 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SHOX2O60902 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
SHOX2O60902 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
SHOX2O60902 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SHOX2O60902 AC011477.6-201ENST00000604980 1927 ntBASIC16.33■□□□□ 0.21
SHOX2O60902 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SHOX2O60902 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
SHOX2O60902 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SHOX2O60902 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
SHOX2O60902 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
SHOX2O60902 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC16.33■□□□□ 0.21
SHOX2O60902 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SHOX2O60902 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SHOX2O60902 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SHOX2O60902 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SHOX2O60902 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC16.33■□□□□ 0.2
SHOX2O60902 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SHOX2O60902 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
SHOX2O60902 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
SHOX2O60902 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SHOX2O60902 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC16.33■□□□□ 0.2
SHOX2O60902 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
SHOX2O60902 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.33■□□□□ 0.2
SHOX2O60902 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
SHOX2O60902 AC010203.1-204ENST00000548782 407 ntBASIC16.33■□□□□ 0.2
SHOX2O60902 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC16.33■□□□□ 0.2
SHOX2O60902 AL441883.1-201ENST00000566170 1045 ntBASIC16.33■□□□□ 0.2
SHOX2O60902 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
SHOX2O60902 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC16.33■□□□□ 0.2
SHOX2O60902 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
SHOX2O60902 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC16.33■□□□□ 0.2
SHOX2O60902 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
SHOX2O60902 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC16.33■□□□□ 0.2
SHOX2O60902 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC16.33■□□□□ 0.2
SHOX2O60902 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SHOX2O60902 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SHOX2O60902 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SHOX2O60902 BX640514.1-201ENST00000583223 1918 ntBASIC16.33■□□□□ 0.2
SHOX2O60902 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
SHOX2O60902 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SHOX2O60902 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SHOX2O60902 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SHOX2O60902 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC16.33■□□□□ 0.2
SHOX2O60902 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.32■□□□□ 0.2
SHOX2O60902 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SHOX2O60902 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC16.32■□□□□ 0.2
SHOX2O60902 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SHOX2O60902 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SHOX2O60902 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SHOX2O60902 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
SHOX2O60902 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SHOX2O60902 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SHOX2O60902 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
SHOX2O60902 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SHOX2O60902 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.32■□□□□ 0.2
SHOX2O60902 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SHOX2O60902 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SHOX2O60902 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.32■□□□□ 0.2
SHOX2O60902 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
SHOX2O60902 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SHOX2O60902 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
SHOX2O60902 SPDYE15P-201ENST00000424157 909 ntBASIC16.32■□□□□ 0.2
SHOX2O60902 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SHOX2O60902 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SHOX2O60902 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.32■□□□□ 0.2
SHOX2O60902 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SHOX2O60902 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
SHOX2O60902 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SHOX2O60902 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC16.32■□□□□ 0.2
SHOX2O60902 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SHOX2O60902 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.32■□□□□ 0.2
SHOX2O60902 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SHOX2O60902 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.32■□□□□ 0.2
SHOX2O60902 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
SHOX2O60902 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
SHOX2O60902 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC16.32■□□□□ 0.2
SHOX2O60902 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms