Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
VPS13AQ96RL7 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
VPS13AQ96RL7 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
VPS13AQ96RL7 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
VPS13AQ96RL7 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
VPS13AQ96RL7 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC15.83■□□□□ 0.13
VPS13AQ96RL7 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC15.83■□□□□ 0.13
VPS13AQ96RL7 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
VPS13AQ96RL7 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC15.83■□□□□ 0.13
VPS13AQ96RL7 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
VPS13AQ96RL7 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
VPS13AQ96RL7 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.13
VPS13AQ96RL7 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
VPS13AQ96RL7 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.13
VPS13AQ96RL7 AHCYP2-201ENST00000430630 1300 ntBASIC15.83■□□□□ 0.12
VPS13AQ96RL7 CYP4F24P-201ENST00000586049 1580 ntBASIC15.83■□□□□ 0.12
VPS13AQ96RL7 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
VPS13AQ96RL7 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC15.83■□□□□ 0.12
VPS13AQ96RL7 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC15.83■□□□□ 0.12
VPS13AQ96RL7 ARTN-209ENST00000479128 471 ntTSL 3 BASIC15.83■□□□□ 0.12
VPS13AQ96RL7 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC15.83■□□□□ 0.12
VPS13AQ96RL7 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC15.83■□□□□ 0.12
VPS13AQ96RL7 MIR3907-201ENST00000579424 151 ntBASIC15.83■□□□□ 0.12
VPS13AQ96RL7 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC15.83■□□□□ 0.12
VPS13AQ96RL7 AL451050.2-201ENST00000606967 682 ntBASIC15.83■□□□□ 0.12
VPS13AQ96RL7 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC15.83■□□□□ 0.12
VPS13AQ96RL7 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS13AQ96RL7 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC15.83■□□□□ 0.12
VPS13AQ96RL7 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS13AQ96RL7 FOS-202ENST00000535987 1402 ntTSL 2 BASIC15.83■□□□□ 0.12
VPS13AQ96RL7 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC15.83■□□□□ 0.12
VPS13AQ96RL7 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.83■□□□□ 0.12
VPS13AQ96RL7 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC15.83■□□□□ 0.12
VPS13AQ96RL7 RPL13AP19-201ENST00000434320 584 ntBASIC15.83■□□□□ 0.12
VPS13AQ96RL7 AC069218.1-201ENST00000435269 762 ntBASIC15.83■□□□□ 0.12
VPS13AQ96RL7 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
VPS13AQ96RL7 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC15.83■□□□□ 0.12
VPS13AQ96RL7 HLA-C-210ENST00000640219 976 ntBASIC15.83■□□□□ 0.12
VPS13AQ96RL7 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
VPS13AQ96RL7 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
VPS13AQ96RL7 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS13AQ96RL7 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC15.82■□□□□ 0.12
VPS13AQ96RL7 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS13AQ96RL7 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
VPS13AQ96RL7 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
VPS13AQ96RL7 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC15.82■□□□□ 0.12
VPS13AQ96RL7 AC012441.1-201ENST00000446669 685 ntBASIC15.82■□□□□ 0.12
VPS13AQ96RL7 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VPS13AQ96RL7 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC15.82■□□□□ 0.12
VPS13AQ96RL7 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC15.82■□□□□ 0.12
VPS13AQ96RL7 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC15.82■□□□□ 0.12
VPS13AQ96RL7 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS13AQ96RL7 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC15.82■□□□□ 0.12
VPS13AQ96RL7 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS13AQ96RL7 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.82■□□□□ 0.12
VPS13AQ96RL7 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VPS13AQ96RL7 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VPS13AQ96RL7 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC15.82■□□□□ 0.12
VPS13AQ96RL7 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC15.82■□□□□ 0.12
VPS13AQ96RL7 HLA-DQB2-229ENST00000411527 1059 ntBASIC15.82■□□□□ 0.12
VPS13AQ96RL7 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC15.82■□□□□ 0.12
VPS13AQ96RL7 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC15.82■□□□□ 0.12
VPS13AQ96RL7 AL139011.1-202ENST00000642063 584 ntBASIC15.82■□□□□ 0.12
VPS13AQ96RL7 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC15.82■□□□□ 0.12
VPS13AQ96RL7 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.82■□□□□ 0.12
VPS13AQ96RL7 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC15.82■□□□□ 0.12
VPS13AQ96RL7 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.82■□□□□ 0.12
VPS13AQ96RL7 GRN-222ENST00000639447 1314 ntTSL 2 BASIC15.82■□□□□ 0.12
VPS13AQ96RL7 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VPS13AQ96RL7 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 FGFR3P5-201ENST00000564496 886 ntBASIC15.81■□□□□ 0.12
VPS13AQ96RL7 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 AC079336.7-201ENST00000623428 1078 ntBASIC15.81■□□□□ 0.12
VPS13AQ96RL7 AC011676.5-201ENST00000624864 2660 ntBASIC15.81■□□□□ 0.12
VPS13AQ96RL7 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 SPTLC1P5-201ENST00000450718 252 ntBASIC15.81■□□□□ 0.12
VPS13AQ96RL7 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
VPS13AQ96RL7 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms