Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 AC026410.3-201ENST00000514280 936 ntBASIC16.93■□□□□ 0.3
CHD9Q3L8U1 AC009486.1-201ENST00000569860 813 ntBASIC16.93■□□□□ 0.3
CHD9Q3L8U1 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 AC018635.2-201ENST00000608625 364 ntBASIC16.93■□□□□ 0.3
CHD9Q3L8U1 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 APOA2-204ENST00000464492 530 ntTSL 3 BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC16.93■□□□□ 0.3
CHD9Q3L8U1 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 AC005052.1-201ENST00000625181 2492 ntBASIC16.92■□□□□ 0.3
CHD9Q3L8U1 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.92■□□□□ 0.3
CHD9Q3L8U1 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 AC004987.2-201ENST00000395959 1148 ntBASIC16.92■□□□□ 0.3
CHD9Q3L8U1 AC005077.2-201ENST00000449786 690 ntBASIC16.92■□□□□ 0.3
CHD9Q3L8U1 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 AC104784.1-201ENST00000473096 294 ntBASIC16.92■□□□□ 0.3
CHD9Q3L8U1 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 AL390961.4-201ENST00000623958 2535 ntBASIC16.92■□□□□ 0.3
CHD9Q3L8U1 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 SDCCAG3P2-201ENST00000326105 1023 ntBASIC16.92■□□□□ 0.3
CHD9Q3L8U1 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 AC093433.1-201ENST00000458048 571 ntBASIC16.92■□□□□ 0.3
CHD9Q3L8U1 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 HNRNPA1P48-202ENST00000565308 961 ntBASIC16.92■□□□□ 0.3
CHD9Q3L8U1 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 AC138951.2-201ENST00000623455 1161 ntBASIC16.92■□□□□ 0.3
CHD9Q3L8U1 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
CHD9Q3L8U1 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 TEX30-203ENST00000376022 828 ntTSL 2 BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 AC022137.2-201ENST00000503482 481 ntBASIC16.91■□□□□ 0.3
CHD9Q3L8U1 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 AC060834.1-201ENST00000443027 2032 ntBASIC16.91■□□□□ 0.3
CHD9Q3L8U1 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 RPSAP36-202ENST00000494591 1261 ntBASIC16.91■□□□□ 0.3
CHD9Q3L8U1 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC16.91■□□□□ 0.3
CHD9Q3L8U1 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms