Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL8A1P27658 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.22□□□□□ -0.13
COL8A1P27658 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.22□□□□□ -0.13
COL8A1P27658 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.22□□□□□ -0.13
COL8A1P27658 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC14.22□□□□□ -0.13
COL8A1P27658 AC104596.2-201ENST00000512793 793 ntBASIC14.22□□□□□ -0.13
COL8A1P27658 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
COL8A1P27658 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC14.22□□□□□ -0.13
COL8A1P27658 AL118558.3-201ENST00000607414 1079 ntBASIC14.22□□□□□ -0.13
COL8A1P27658 U62317.3-201ENST00000608319 855 ntBASIC14.22□□□□□ -0.13
COL8A1P27658 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC14.22□□□□□ -0.13
COL8A1P27658 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC14.22□□□□□ -0.13
COL8A1P27658 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL8A1P27658 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL8A1P27658 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL8A1P27658 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL8A1P27658 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC14.22□□□□□ -0.13
COL8A1P27658 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
COL8A1P27658 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL8A1P27658 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL8A1P27658 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL8A1P27658 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL8A1P27658 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC14.22□□□□□ -0.13
COL8A1P27658 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL8A1P27658 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL8A1P27658 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
COL8A1P27658 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL8A1P27658 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC14.22□□□□□ -0.13
COL8A1P27658 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL8A1P27658 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL8A1P27658 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC14.22□□□□□ -0.13
COL8A1P27658 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL8A1P27658 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL8A1P27658 FLJ13224-201ENST00000313737 1514 ntBASIC14.21□□□□□ -0.13
COL8A1P27658 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
COL8A1P27658 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL8A1P27658 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL8A1P27658 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC14.21□□□□□ -0.13
COL8A1P27658 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
COL8A1P27658 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC14.21□□□□□ -0.13
COL8A1P27658 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.13
COL8A1P27658 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL8A1P27658 MGST3-203ENST00000367885 680 ntTSL 2 BASIC14.21□□□□□ -0.13
COL8A1P27658 AGER-203ENST00000375065 665 ntTSL 2 BASIC14.21□□□□□ -0.13
COL8A1P27658 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL8A1P27658 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL8A1P27658 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL8A1P27658 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC14.21□□□□□ -0.13
COL8A1P27658 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC14.21□□□□□ -0.13
COL8A1P27658 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC14.21□□□□□ -0.13
COL8A1P27658 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC14.21□□□□□ -0.13
COL8A1P27658 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL8A1P27658 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
COL8A1P27658 NAA38-207ENST00000576861 556 ntTSL 3 BASIC14.21□□□□□ -0.13
COL8A1P27658 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC14.21□□□□□ -0.13
COL8A1P27658 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL8A1P27658 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
COL8A1P27658 AC020765.3-201ENST00000613051 740 ntBASIC14.21□□□□□ -0.13
COL8A1P27658 AC009542.2-202ENST00000619004 1067 ntBASIC14.21□□□□□ -0.13
COL8A1P27658 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC14.21□□□□□ -0.13
COL8A1P27658 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL8A1P27658 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL8A1P27658 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL8A1P27658 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
COL8A1P27658 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
COL8A1P27658 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC14.21□□□□□ -0.13
COL8A1P27658 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC14.21□□□□□ -0.13
COL8A1P27658 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
COL8A1P27658 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
COL8A1P27658 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
COL8A1P27658 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC14.21□□□□□ -0.14
COL8A1P27658 AC008764.6-201ENST00000595909 2069 ntBASIC14.21□□□□□ -0.14
COL8A1P27658 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
COL8A1P27658 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
COL8A1P27658 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
COL8A1P27658 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.14
COL8A1P27658 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
COL8A1P27658 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL8A1P27658 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
COL8A1P27658 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL8A1P27658 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
COL8A1P27658 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC14.2□□□□□ -0.14
COL8A1P27658 FOS-208ENST00000555686 1496 ntTSL 2 BASIC14.2□□□□□ -0.14
COL8A1P27658 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL8A1P27658 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL8A1P27658 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL8A1P27658 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC14.2□□□□□ -0.14
COL8A1P27658 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC14.2□□□□□ -0.14
COL8A1P27658 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC14.2□□□□□ -0.14
COL8A1P27658 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC14.2□□□□□ -0.14
COL8A1P27658 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC14.2□□□□□ -0.14
COL8A1P27658 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC14.2□□□□□ -0.14
COL8A1P27658 FO681548.1-201ENST00000455617 1132 ntBASIC14.2□□□□□ -0.14
COL8A1P27658 RPL13AP20-201ENST00000459725 609 ntBASIC14.2□□□□□ -0.14
COL8A1P27658 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL8A1P27658 TDH-203ENST00000531764 1110 ntBASIC14.2□□□□□ -0.14
COL8A1P27658 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC14.2□□□□□ -0.14
COL8A1P27658 APRT-204ENST00000563655 709 ntTSL 5 BASIC14.2□□□□□ -0.14
COL8A1P27658 AC016629.1-201ENST00000596579 586 ntBASIC14.2□□□□□ -0.14
COL8A1P27658 AC010328.2-201ENST00000597698 1111 ntBASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms