Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 CBR1-202ENST00000399191 838 ntTSL 3 BASIC19.24■□□□□ 0.67
HMGB1P09429 DNAJB3-201ENST00000446806 729 ntBASIC19.24■□□□□ 0.67
HMGB1P09429 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC19.24■□□□□ 0.67
HMGB1P09429 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC19.24■□□□□ 0.67
HMGB1P09429 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC19.24■□□□□ 0.67
HMGB1P09429 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC19.24■□□□□ 0.67
HMGB1P09429 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC19.24■□□□□ 0.67
HMGB1P09429 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC19.24■□□□□ 0.67
HMGB1P09429 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC19.24■□□□□ 0.67
HMGB1P09429 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGB1P09429 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
HMGB1P09429 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HMGB1P09429 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGB1P09429 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGB1P09429 SUPT20HL2-201ENST00000486479 2409 ntBASIC19.24■□□□□ 0.67
HMGB1P09429 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC19.24■□□□□ 0.67
HMGB1P09429 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
HMGB1P09429 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGB1P09429 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
HMGB1P09429 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
HMGB1P09429 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
HMGB1P09429 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
HMGB1P09429 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
HMGB1P09429 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HMGB1P09429 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
HMGB1P09429 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGB1P09429 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC19.23■□□□□ 0.67
HMGB1P09429 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HMGB1P09429 GOLGA2P9-201ENST00000596977 1937 ntBASIC19.23■□□□□ 0.67
HMGB1P09429 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HMGB1P09429 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC19.23■□□□□ 0.67
HMGB1P09429 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC19.23■□□□□ 0.67
HMGB1P09429 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGB1P09429 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC19.23■□□□□ 0.67
HMGB1P09429 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
HMGB1P09429 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC19.23■□□□□ 0.67
HMGB1P09429 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC19.23■□□□□ 0.67
HMGB1P09429 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC19.23■□□□□ 0.67
HMGB1P09429 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGB1P09429 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC19.23■□□□□ 0.67
HMGB1P09429 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGB1P09429 MIR346-201ENST00000362234 95 ntBASIC19.23■□□□□ 0.67
HMGB1P09429 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGB1P09429 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC19.23■□□□□ 0.67
HMGB1P09429 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
HMGB1P09429 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC19.23■□□□□ 0.67
HMGB1P09429 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC19.23■□□□□ 0.67
HMGB1P09429 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC19.23■□□□□ 0.67
HMGB1P09429 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC19.23■□□□□ 0.67
HMGB1P09429 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC19.23■□□□□ 0.67
HMGB1P09429 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC19.23■□□□□ 0.67
HMGB1P09429 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC19.23■□□□□ 0.67
HMGB1P09429 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
HMGB1P09429 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HMGB1P09429 FOXO1B-201ENST00000504678 1527 ntBASIC19.23■□□□□ 0.67
HMGB1P09429 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
HMGB1P09429 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
HMGB1P09429 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGB1P09429 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC19.23■□□□□ 0.67
HMGB1P09429 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC19.23■□□□□ 0.67
HMGB1P09429 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGB1P09429 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGB1P09429 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC19.23■□□□□ 0.67
HMGB1P09429 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGB1P09429 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGB1P09429 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGB1P09429 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HMGB1P09429 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC19.22■□□□□ 0.67
HMGB1P09429 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGB1P09429 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGB1P09429 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGB1P09429 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGB1P09429 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGB1P09429 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGB1P09429 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HMGB1P09429 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGB1P09429 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGB1P09429 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGB1P09429 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC19.22■□□□□ 0.67
HMGB1P09429 PP14571-201ENST00000404327 934 ntTSL 2 BASIC19.22■□□□□ 0.67
HMGB1P09429 AC142381.1-201ENST00000426099 345 ntBASIC19.22■□□□□ 0.67
HMGB1P09429 AP000347.1-202ENST00000435868 847 ntBASIC19.22■□□□□ 0.67
HMGB1P09429 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
HMGB1P09429 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC19.22■□□□□ 0.67
HMGB1P09429 AC079140.1-201ENST00000508039 487 ntBASIC19.22■□□□□ 0.67
HMGB1P09429 LINC01225-203ENST00000563550 1244 ntBASIC19.22■□□□□ 0.67
HMGB1P09429 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC19.22■□□□□ 0.67
HMGB1P09429 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
HMGB1P09429 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC19.22■□□□□ 0.67
HMGB1P09429 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
HMGB1P09429 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC19.22■□□□□ 0.67
HMGB1P09429 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC19.22■□□□□ 0.67
HMGB1P09429 AC010491.1-201ENST00000563101 2797 ntBASIC19.22■□□□□ 0.67
HMGB1P09429 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
HMGB1P09429 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC19.22■□□□□ 0.67
HMGB1P09429 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGB1P09429 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGB1P09429 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC19.22■□□□□ 0.67
HMGB1P09429 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGB1P09429 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms