Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 ANKRD20A8P-203ENST00000641373 517 ntBASIC12.34□□□□□ -0.43
HLA-DQA1P01909 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC12.34□□□□□ -0.43
HLA-DQA1P01909 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
HLA-DQA1P01909 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.43
HLA-DQA1P01909 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 SLC25A3P1-201ENST00000443844 931 ntBASIC12.33□□□□□ -0.44
HLA-DQA1P01909 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 DUX4L17-201ENST00000557360 1267 ntBASIC12.33□□□□□ -0.44
HLA-DQA1P01909 DUT-205ENST00000558813 769 ntTSL 2 BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 AC004263.2-201ENST00000617183 678 ntBASIC12.33□□□□□ -0.44
HLA-DQA1P01909 AC005363.2-201ENST00000618631 242 ntBASIC12.33□□□□□ -0.44
HLA-DQA1P01909 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 VPS72-207ENST00000640458 689 ntTSL 5 BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 AC092919.2-201ENST00000623631 1645 ntBASIC12.33□□□□□ -0.44
HLA-DQA1P01909 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
HLA-DQA1P01909 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
HLA-DQA1P01909 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms