Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC20.62■□□□□ 0.89
SCN11AQ9UI33 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC20.62■□□□□ 0.89
SCN11AQ9UI33 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SCN11AQ9UI33 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
SCN11AQ9UI33 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC20.61■□□□□ 0.89
SCN11AQ9UI33 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCN11AQ9UI33 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCN11AQ9UI33 MTHFR-217ENST00000641820 1569 ntBASIC20.61■□□□□ 0.89
SCN11AQ9UI33 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC20.61■□□□□ 0.89
SCN11AQ9UI33 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC20.61■□□□□ 0.89
SCN11AQ9UI33 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCN11AQ9UI33 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCN11AQ9UI33 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCN11AQ9UI33 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SCN11AQ9UI33 TP73-213ENST00000604479 1623 ntTSL 5 BASIC20.61■□□□□ 0.89
SCN11AQ9UI33 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SCN11AQ9UI33 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC20.61■□□□□ 0.89
SCN11AQ9UI33 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SCN11AQ9UI33 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC20.61■□□□□ 0.89
SCN11AQ9UI33 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
SCN11AQ9UI33 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC20.61■□□□□ 0.89
SCN11AQ9UI33 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC20.61■□□□□ 0.89
SCN11AQ9UI33 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC20.61■□□□□ 0.89
SCN11AQ9UI33 REXO1L1P-202ENST00000608646 1974 ntBASIC20.61■□□□□ 0.89
SCN11AQ9UI33 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SCN11AQ9UI33 AC106886.4-201ENST00000623557 2502 ntBASIC20.61■□□□□ 0.89
SCN11AQ9UI33 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCN11AQ9UI33 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC20.61■□□□□ 0.89
SCN11AQ9UI33 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC20.61■□□□□ 0.89
SCN11AQ9UI33 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC20.61■□□□□ 0.89
SCN11AQ9UI33 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC20.61■□□□□ 0.89
SCN11AQ9UI33 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC20.61■□□□□ 0.89
SCN11AQ9UI33 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC20.61■□□□□ 0.89
SCN11AQ9UI33 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCN11AQ9UI33 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 AL359711.2-201ENST00000563105 872 ntBASIC20.6■□□□□ 0.89
SCN11AQ9UI33 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 AC133539.2-201ENST00000604757 467 ntBASIC20.6■□□□□ 0.89
SCN11AQ9UI33 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 LRRFIP1P1-201ENST00000498774 2246 ntBASIC20.6■□□□□ 0.89
SCN11AQ9UI33 AC011676.5-201ENST00000624864 2660 ntBASIC20.6■□□□□ 0.89
SCN11AQ9UI33 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 AL607033.1-201ENST00000623900 1599 ntBASIC20.6■□□□□ 0.89
SCN11AQ9UI33 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCN11AQ9UI33 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 FAM86MP-201ENST00000340703 885 ntBASIC20.59■□□□□ 0.89
SCN11AQ9UI33 APOA1-205ENST00000375329 927 ntTSL 2 BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 PIGL-212ENST00000581006 554 ntTSL 4 BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCN11AQ9UI33 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms