Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.84■□□□□ 0.45
LIMA1Q9UHB6 KRT18P56-201ENST00000507275 550 ntBASIC17.84■□□□□ 0.45
LIMA1Q9UHB6 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.84■□□□□ 0.45
LIMA1Q9UHB6 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
LIMA1Q9UHB6 AL049840.3-201ENST00000602669 611 ntBASIC17.84■□□□□ 0.45
LIMA1Q9UHB6 MIR7706-201ENST00000613747 67 ntBASIC17.84■□□□□ 0.45
LIMA1Q9UHB6 AL691432.3-201ENST00000621860 400 ntBASIC17.84■□□□□ 0.45
LIMA1Q9UHB6 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMA1Q9UHB6 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMA1Q9UHB6 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMA1Q9UHB6 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
LIMA1Q9UHB6 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC17.84■□□□□ 0.45
LIMA1Q9UHB6 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC17.84■□□□□ 0.45
LIMA1Q9UHB6 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIMA1Q9UHB6 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
LIMA1Q9UHB6 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMA1Q9UHB6 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
LIMA1Q9UHB6 AC011477.6-201ENST00000604980 1927 ntBASIC17.84■□□□□ 0.45
LIMA1Q9UHB6 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMA1Q9UHB6 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIMA1Q9UHB6 ANKRD26P3-201ENST00000454044 2748 ntBASIC17.84■□□□□ 0.45
LIMA1Q9UHB6 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC17.83■□□□□ 0.45
LIMA1Q9UHB6 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.83■□□□□ 0.45
LIMA1Q9UHB6 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
LIMA1Q9UHB6 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC17.83■□□□□ 0.45
LIMA1Q9UHB6 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
LIMA1Q9UHB6 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LIMA1Q9UHB6 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC17.83■□□□□ 0.45
LIMA1Q9UHB6 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.83■□□□□ 0.45
LIMA1Q9UHB6 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 METTL26-205ENST00000397666 726 ntTSL 2 BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 RHOQP3-201ENST00000437982 621 ntBASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 AC079781.3-201ENST00000449110 356 ntBASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 HCG4B-203ENST00000450128 991 ntBASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 AL365330.1-201ENST00000607459 531 ntBASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIMA1Q9UHB6 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 AC098831.1-202ENST00000438821 336 ntBASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 AC009947.1-201ENST00000444350 727 ntBASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 PPIE-208ENST00000470213 927 ntTSL 3 BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 UNC93B6-202ENST00000528242 690 ntBASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 AL078644.1-201ENST00000609881 752 ntBASIC17.82■□□□□ 0.44
LIMA1Q9UHB6 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms