Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
ATG4AQ8WYN0 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.97■□□□□ 0.31
ATG4AQ8WYN0 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.97■□□□□ 0.31
ATG4AQ8WYN0 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
ATG4AQ8WYN0 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
ATG4AQ8WYN0 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ATG4AQ8WYN0 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ATG4AQ8WYN0 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.97■□□□□ 0.31
ATG4AQ8WYN0 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.97■□□□□ 0.31
ATG4AQ8WYN0 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
ATG4AQ8WYN0 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC16.97■□□□□ 0.31
ATG4AQ8WYN0 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
ATG4AQ8WYN0 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.97■□□□□ 0.31
ATG4AQ8WYN0 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.97■□□□□ 0.31
ATG4AQ8WYN0 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
ATG4AQ8WYN0 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC16.97■□□□□ 0.31
ATG4AQ8WYN0 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.97■□□□□ 0.31
ATG4AQ8WYN0 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.97■□□□□ 0.31
ATG4AQ8WYN0 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ATG4AQ8WYN0 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ATG4AQ8WYN0 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
ATG4AQ8WYN0 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
ATG4AQ8WYN0 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
ATG4AQ8WYN0 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 AL513480.1-201ENST00000451731 511 ntBASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 AC021097.1-201ENST00000607902 574 ntBASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ATG4AQ8WYN0 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
ATG4AQ8WYN0 AC013268.4-201ENST00000637413 2228 ntBASIC16.96■□□□□ 0.3
ATG4AQ8WYN0 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.96■□□□□ 0.3
ATG4AQ8WYN0 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
ATG4AQ8WYN0 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.3
ATG4AQ8WYN0 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
ATG4AQ8WYN0 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC16.96■□□□□ 0.3
ATG4AQ8WYN0 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 RPS2P28-201ENST00000314255 741 ntBASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 AC098831.1-202ENST00000438821 336 ntBASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 AL031008.1-201ENST00000619963 541 ntBASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ATG4AQ8WYN0 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms