Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
USP41Q3LFD5 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
USP41Q3LFD5 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP41Q3LFD5 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC17.32■□□□□ 0.36
USP41Q3LFD5 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP41Q3LFD5 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
USP41Q3LFD5 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
USP41Q3LFD5 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP41Q3LFD5 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP41Q3LFD5 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP41Q3LFD5 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
USP41Q3LFD5 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP41Q3LFD5 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP41Q3LFD5 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC17.32■□□□□ 0.36
USP41Q3LFD5 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC17.32■□□□□ 0.36
USP41Q3LFD5 API5-211ENST00000534695 560 ntTSL 5 BASIC17.32■□□□□ 0.36
USP41Q3LFD5 AC044860.1-202ENST00000559481 777 ntBASIC17.32■□□□□ 0.36
USP41Q3LFD5 AC104794.3-201ENST00000566840 1248 ntBASIC17.32■□□□□ 0.36
USP41Q3LFD5 AC140912.1-201ENST00000577171 1054 ntBASIC17.32■□□□□ 0.36
USP41Q3LFD5 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC17.32■□□□□ 0.36
USP41Q3LFD5 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP41Q3LFD5 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC17.32■□□□□ 0.36
USP41Q3LFD5 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC17.32■□□□□ 0.36
USP41Q3LFD5 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP41Q3LFD5 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
USP41Q3LFD5 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP41Q3LFD5 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP41Q3LFD5 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.32■□□□□ 0.36
USP41Q3LFD5 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP41Q3LFD5 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP41Q3LFD5 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP41Q3LFD5 RELA-227ENST00000615805 2236 ntTSL 5 BASIC17.32■□□□□ 0.36
USP41Q3LFD5 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP41Q3LFD5 IMPDH1P4-201ENST00000445028 1534 ntBASIC17.31■□□□□ 0.36
USP41Q3LFD5 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC17.31■□□□□ 0.36
USP41Q3LFD5 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
USP41Q3LFD5 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.31■□□□□ 0.36
USP41Q3LFD5 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP41Q3LFD5 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.31■□□□□ 0.36
USP41Q3LFD5 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP41Q3LFD5 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
USP41Q3LFD5 CU639417.3-201ENST00000624240 1404 ntBASIC17.31■□□□□ 0.36
USP41Q3LFD5 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP41Q3LFD5 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
USP41Q3LFD5 AL391825.1-201ENST00000457671 1364 ntBASIC17.31■□□□□ 0.36
USP41Q3LFD5 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
USP41Q3LFD5 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
USP41Q3LFD5 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
USP41Q3LFD5 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC17.31■□□□□ 0.36
USP41Q3LFD5 LINC01144-201ENST00000626198 1710 ntBASIC17.31■□□□□ 0.36
USP41Q3LFD5 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP41Q3LFD5 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
USP41Q3LFD5 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC17.31■□□□□ 0.36
USP41Q3LFD5 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC17.31■□□□□ 0.36
USP41Q3LFD5 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC17.31■□□□□ 0.36
USP41Q3LFD5 DFFBP1-201ENST00000433250 979 ntBASIC17.31■□□□□ 0.36
USP41Q3LFD5 GNAQP1-201ENST00000444815 1067 ntBASIC17.31■□□□□ 0.36
USP41Q3LFD5 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC17.31■□□□□ 0.36
USP41Q3LFD5 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC17.31■□□□□ 0.36
USP41Q3LFD5 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC17.31■□□□□ 0.36
USP41Q3LFD5 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC17.31■□□□□ 0.36
USP41Q3LFD5 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
USP41Q3LFD5 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC17.31■□□□□ 0.36
USP41Q3LFD5 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP41Q3LFD5 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
USP41Q3LFD5 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
USP41Q3LFD5 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.31■□□□□ 0.36
USP41Q3LFD5 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP41Q3LFD5 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
USP41Q3LFD5 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
USP41Q3LFD5 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
USP41Q3LFD5 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP41Q3LFD5 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
USP41Q3LFD5 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.3■□□□□ 0.36
USP41Q3LFD5 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP41Q3LFD5 AL162727.3-201ENST00000635661 2787 ntBASIC17.3■□□□□ 0.36
USP41Q3LFD5 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP41Q3LFD5 AC005622.1-201ENST00000636801 1703 ntBASIC17.3■□□□□ 0.36
USP41Q3LFD5 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
USP41Q3LFD5 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP41Q3LFD5 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
USP41Q3LFD5 AC087499.6-201ENST00000411576 835 ntBASIC17.3■□□□□ 0.36
USP41Q3LFD5 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC17.3■□□□□ 0.36
USP41Q3LFD5 RASL12-203ENST00000434605 982 ntTSL 2 BASIC17.3■□□□□ 0.36
USP41Q3LFD5 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
USP41Q3LFD5 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC17.3■□□□□ 0.36
USP41Q3LFD5 DOC2GP-202ENST00000514950 1163 ntBASIC17.3■□□□□ 0.36
USP41Q3LFD5 SDHAP3-202ENST00000515467 728 ntBASIC17.3■□□□□ 0.36
USP41Q3LFD5 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC17.3■□□□□ 0.36
USP41Q3LFD5 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC17.3■□□□□ 0.36
USP41Q3LFD5 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC17.3■□□□□ 0.36
USP41Q3LFD5 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP41Q3LFD5 TEX48-202ENST00000612244 662 ntTSL 3 BASIC17.3■□□□□ 0.36
USP41Q3LFD5 MIR6069-201ENST00000620069 79 ntBASIC17.3■□□□□ 0.36
USP41Q3LFD5 AP001094.4-201ENST00000579008 2176 ntBASIC17.3■□□□□ 0.36
USP41Q3LFD5 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP41Q3LFD5 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP41Q3LFD5 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.3■□□□□ 0.36
USP41Q3LFD5 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
USP41Q3LFD5 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms