Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC16.96■□□□□ 0.31
CHD9Q3L8U1 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC16.96■□□□□ 0.31
CHD9Q3L8U1 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
CHD9Q3L8U1 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
CHD9Q3L8U1 U62317.3-201ENST00000608319 855 ntBASIC16.96■□□□□ 0.31
CHD9Q3L8U1 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
CHD9Q3L8U1 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.96■□□□□ 0.31
CHD9Q3L8U1 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CHD9Q3L8U1 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CHD9Q3L8U1 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
CHD9Q3L8U1 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 AC025279.2-201ENST00000569730 653 ntBASIC16.95■□□□□ 0.3
CHD9Q3L8U1 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 GUK1-206ENST00000366723 845 ntTSL 5 BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 BRF1-202ENST00000379932 884 ntTSL 5 BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 NKAIN1P1-201ENST00000435754 582 ntBASIC16.95■□□□□ 0.3
CHD9Q3L8U1 UPF3AP2-201ENST00000457924 1132 ntBASIC16.95■□□□□ 0.3
CHD9Q3L8U1 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 RN7SL555P-201ENST00000584742 339 ntBASIC16.95■□□□□ 0.3
CHD9Q3L8U1 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.95■□□□□ 0.3
CHD9Q3L8U1 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 GRN-222ENST00000639447 1314 ntTSL 2 BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 AC016700.1-201ENST00000429424 312 ntBASIC16.94■□□□□ 0.3
CHD9Q3L8U1 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 RPL13AP25-201ENST00000484130 612 ntBASIC16.94■□□□□ 0.3
CHD9Q3L8U1 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 IMP3P2-201ENST00000489760 475 ntBASIC16.94■□□□□ 0.3
CHD9Q3L8U1 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CHD9Q3L8U1 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHD9Q3L8U1 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms