Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 AC069120.2-201ENST00000524091 540 ntBASIC17.52■□□□□ 0.4
VCPP55072 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.52■□□□□ 0.4
VCPP55072 AL135744.1-201ENST00000565098 629 ntBASIC17.52■□□□□ 0.4
VCPP55072 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VCPP55072 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VCPP55072 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
VCPP55072 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
VCPP55072 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
VCPP55072 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
VCPP55072 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.52■□□□□ 0.39
VCPP55072 AL662844.4-201ENST00000606367 2838 ntBASIC17.52■□□□□ 0.39
VCPP55072 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
VCPP55072 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
VCPP55072 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
VCPP55072 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.51■□□□□ 0.39
VCPP55072 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC17.51■□□□□ 0.39
VCPP55072 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.51■□□□□ 0.39
VCPP55072 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCPP55072 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.51■□□□□ 0.39
VCPP55072 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCPP55072 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VCPP55072 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.51■□□□□ 0.39
VCPP55072 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.51■□□□□ 0.39
VCPP55072 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCPP55072 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
VCPP55072 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCPP55072 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
VCPP55072 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
VCPP55072 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
VCPP55072 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
VCPP55072 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
VCPP55072 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VCPP55072 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCPP55072 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC17.51■□□□□ 0.39
VCPP55072 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
VCPP55072 MRPS18AP1-201ENST00000414458 589 ntBASIC17.51■□□□□ 0.39
VCPP55072 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCPP55072 AC092580.3-201ENST00000430932 139 ntBASIC17.51■□□□□ 0.39
VCPP55072 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCPP55072 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC17.51■□□□□ 0.39
VCPP55072 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC17.51■□□□□ 0.39
VCPP55072 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.51■□□□□ 0.39
VCPP55072 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.51■□□□□ 0.39
VCPP55072 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC17.51■□□□□ 0.39
VCPP55072 AC010336.2-201ENST00000564226 506 ntBASIC17.51■□□□□ 0.39
VCPP55072 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VCPP55072 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VCPP55072 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCPP55072 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
VCPP55072 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VCPP55072 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC17.51■□□□□ 0.39
VCPP55072 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VCPP55072 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VCPP55072 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
VCPP55072 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
VCPP55072 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.5■□□□□ 0.39
VCPP55072 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VCPP55072 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VCPP55072 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
VCPP55072 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
VCPP55072 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.5■□□□□ 0.39
VCPP55072 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.5■□□□□ 0.39
VCPP55072 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.5■□□□□ 0.39
VCPP55072 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VCPP55072 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VCPP55072 KRT8P49-201ENST00000604166 1432 ntBASIC17.5■□□□□ 0.39
VCPP55072 CU639417.3-201ENST00000624240 1404 ntBASIC17.5■□□□□ 0.39
VCPP55072 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VCPP55072 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VCPP55072 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC17.5■□□□□ 0.39
VCPP55072 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC17.5■□□□□ 0.39
VCPP55072 PPP6R2P1-201ENST00000450880 1275 ntBASIC17.5■□□□□ 0.39
VCPP55072 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC17.5■□□□□ 0.39
VCPP55072 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC17.5■□□□□ 0.39
VCPP55072 AC004890.2-204ENST00000481968 304 ntBASIC17.5■□□□□ 0.39
VCPP55072 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC17.5■□□□□ 0.39
VCPP55072 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.5■□□□□ 0.39
VCPP55072 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VCPP55072 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
VCPP55072 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.5■□□□□ 0.39
VCPP55072 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VCPP55072 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VCPP55072 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VCPP55072 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC17.5■□□□□ 0.39
VCPP55072 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VCPP55072 AC026691.1-201ENST00000602502 2017 ntBASIC17.5■□□□□ 0.39
VCPP55072 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
VCPP55072 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VCPP55072 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
VCPP55072 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
VCPP55072 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.5■□□□□ 0.39
VCPP55072 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VCPP55072 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VCPP55072 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
VCPP55072 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
VCPP55072 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VCPP55072 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
VCPP55072 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VCPP55072 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VCPP55072 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms