Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
HMGB1P09429 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
HMGB1P09429 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HMGB1P09429 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
HMGB1P09429 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
HMGB1P09429 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB1P09429 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB1P09429 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB1P09429 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
HMGB1P09429 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC19.26■□□□□ 0.67
HMGB1P09429 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB1P09429 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB1P09429 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC19.26■□□□□ 0.67
HMGB1P09429 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB1P09429 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB1P09429 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB1P09429 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB1P09429 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB1P09429 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB1P09429 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB1P09429 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB1P09429 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB1P09429 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
HMGB1P09429 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
HMGB1P09429 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB1P09429 HAUS4P1-201ENST00000406739 1145 ntBASIC19.26■□□□□ 0.67
HMGB1P09429 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC19.26■□□□□ 0.67
HMGB1P09429 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC19.26■□□□□ 0.67
HMGB1P09429 GATB-205ENST00000508611 605 ntTSL 2 BASIC19.26■□□□□ 0.67
HMGB1P09429 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC19.26■□□□□ 0.67
HMGB1P09429 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC19.26■□□□□ 0.67
HMGB1P09429 AC243562.1-201ENST00000560672 389 ntBASIC19.26■□□□□ 0.67
HMGB1P09429 AC027307.2-201ENST00000591252 911 ntBASIC19.26■□□□□ 0.67
HMGB1P09429 NKG7-205ENST00000600427 520 ntTSL 3 BASIC19.26■□□□□ 0.67
HMGB1P09429 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC19.26■□□□□ 0.67
HMGB1P09429 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC19.26■□□□□ 0.67
HMGB1P09429 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC19.26■□□□□ 0.67
HMGB1P09429 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB1P09429 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB1P09429 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB1P09429 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB1P09429 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB1P09429 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC19.26■□□□□ 0.67
HMGB1P09429 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC19.26■□□□□ 0.67
HMGB1P09429 AC008677.1-201ENST00000519230 1561 ntBASIC19.26■□□□□ 0.67
HMGB1P09429 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB1P09429 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC19.26■□□□□ 0.67
HMGB1P09429 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGB1P09429 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
HMGB1P09429 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGB1P09429 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC19.25■□□□□ 0.67
HMGB1P09429 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
HMGB1P09429 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGB1P09429 AC112504.1-201ENST00000623415 1841 ntBASIC19.25■□□□□ 0.67
HMGB1P09429 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HMGB1P09429 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGB1P09429 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGB1P09429 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGB1P09429 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGB1P09429 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC19.25■□□□□ 0.67
HMGB1P09429 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGB1P09429 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGB1P09429 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC19.25■□□□□ 0.67
HMGB1P09429 HTR5BP-201ENST00000430851 1154 ntBASIC19.25■□□□□ 0.67
HMGB1P09429 SPDYE11-202ENST00000450699 704 ntBASIC19.25■□□□□ 0.67
HMGB1P09429 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC19.25■□□□□ 0.67
HMGB1P09429 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC19.25■□□□□ 0.67
HMGB1P09429 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC19.25■□□□□ 0.67
HMGB1P09429 KRT8P23-201ENST00000560090 1207 ntBASIC19.25■□□□□ 0.67
HMGB1P09429 SPDYE9P-201ENST00000570642 692 ntBASIC19.25■□□□□ 0.67
HMGB1P09429 AC024267.1-201ENST00000582320 895 ntBASIC19.25■□□□□ 0.67
HMGB1P09429 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC19.25■□□□□ 0.67
HMGB1P09429 SPDYE10P-202ENST00000612005 668 ntBASIC19.25■□□□□ 0.67
HMGB1P09429 SPDYE8P-202ENST00000612377 668 ntBASIC19.25■□□□□ 0.67
HMGB1P09429 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGB1P09429 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
HMGB1P09429 LINC02199-201ENST00000506655 2702 ntBASIC19.25■□□□□ 0.67
HMGB1P09429 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC19.25■□□□□ 0.67
HMGB1P09429 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGB1P09429 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HMGB1P09429 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC19.25■□□□□ 0.67
HMGB1P09429 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGB1P09429 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC19.25■□□□□ 0.67
HMGB1P09429 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC19.25■□□□□ 0.67
HMGB1P09429 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
HMGB1P09429 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGB1P09429 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
HMGB1P09429 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
HMGB1P09429 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGB1P09429 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGB1P09429 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC19.24■□□□□ 0.67
HMGB1P09429 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGB1P09429 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGB1P09429 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC19.24■□□□□ 0.67
HMGB1P09429 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
HMGB1P09429 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGB1P09429 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HMGB1P09429 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC19.24■□□□□ 0.67
HMGB1P09429 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HMGB1P09429 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms