Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SLC28A1O00337 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC15.77■□□□□ 0.12
SLC28A1O00337 CRYGEP-201ENST00000412192 528 ntBASIC15.77■□□□□ 0.12
SLC28A1O00337 AC079781.3-201ENST00000449110 356 ntBASIC15.77■□□□□ 0.12
SLC28A1O00337 PPIE-208ENST00000470213 927 ntTSL 3 BASIC15.77■□□□□ 0.12
SLC28A1O00337 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC15.77■□□□□ 0.12
SLC28A1O00337 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC15.77■□□□□ 0.12
SLC28A1O00337 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC15.77■□□□□ 0.12
SLC28A1O00337 CD63-210ENST00000550776 870 ntTSL 5 BASIC15.77■□□□□ 0.12
SLC28A1O00337 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
SLC28A1O00337 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SLC28A1O00337 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.77■□□□□ 0.12
SLC28A1O00337 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC15.77■□□□□ 0.12
SLC28A1O00337 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SLC28A1O00337 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SLC28A1O00337 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
SLC28A1O00337 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SLC28A1O00337 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
SLC28A1O00337 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SLC28A1O00337 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SLC28A1O00337 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
SLC28A1O00337 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC15.77■□□□□ 0.11
SLC28A1O00337 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SLC28A1O00337 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SLC28A1O00337 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SLC28A1O00337 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC15.76■□□□□ 0.11
SLC28A1O00337 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
SLC28A1O00337 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SLC28A1O00337 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
SLC28A1O00337 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SLC28A1O00337 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
SLC28A1O00337 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SLC28A1O00337 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SLC28A1O00337 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SLC28A1O00337 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
SLC28A1O00337 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
SLC28A1O00337 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SLC28A1O00337 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC15.76■□□□□ 0.11
SLC28A1O00337 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
SLC28A1O00337 AL031284.1-201ENST00000419297 478 ntBASIC15.76■□□□□ 0.11
SLC28A1O00337 AC098831.1-202ENST00000438821 336 ntBASIC15.76■□□□□ 0.11
SLC28A1O00337 FIS1-203ENST00000442303 631 ntTSL 3 BASIC15.76■□□□□ 0.11
SLC28A1O00337 FAAHP1-202ENST00000446499 1238 ntBASIC15.76■□□□□ 0.11
SLC28A1O00337 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC15.76■□□□□ 0.11
SLC28A1O00337 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.76■□□□□ 0.11
SLC28A1O00337 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC15.76■□□□□ 0.11
SLC28A1O00337 AL691432.3-201ENST00000621860 400 ntBASIC15.76■□□□□ 0.11
SLC28A1O00337 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC15.76■□□□□ 0.11
SLC28A1O00337 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
SLC28A1O00337 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
SLC28A1O00337 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
SLC28A1O00337 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SLC28A1O00337 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC15.76■□□□□ 0.11
SLC28A1O00337 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SLC28A1O00337 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SLC28A1O00337 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.76■□□□□ 0.11
SLC28A1O00337 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC15.76■□□□□ 0.11
SLC28A1O00337 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
SLC28A1O00337 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SLC28A1O00337 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SLC28A1O00337 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.76■□□□□ 0.11
SLC28A1O00337 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
SLC28A1O00337 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
SLC28A1O00337 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SLC28A1O00337 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.76■□□□□ 0.11
SLC28A1O00337 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SLC28A1O00337 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
SLC28A1O00337 AC092919.2-201ENST00000623631 1645 ntBASIC15.76■□□□□ 0.11
SLC28A1O00337 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.75■□□□□ 0.11
SLC28A1O00337 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SLC28A1O00337 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
SLC28A1O00337 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC15.75■□□□□ 0.11
SLC28A1O00337 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
SLC28A1O00337 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SLC28A1O00337 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.75■□□□□ 0.11
SLC28A1O00337 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SLC28A1O00337 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SLC28A1O00337 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SLC28A1O00337 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.75■□□□□ 0.11
SLC28A1O00337 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SLC28A1O00337 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SLC28A1O00337 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.75■□□□□ 0.11
SLC28A1O00337 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC15.75■□□□□ 0.11
SLC28A1O00337 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
SLC28A1O00337 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC15.75■□□□□ 0.11
SLC28A1O00337 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SLC28A1O00337 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC15.75■□□□□ 0.11
SLC28A1O00337 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC15.75■□□□□ 0.11
SLC28A1O00337 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC15.75■□□□□ 0.11
SLC28A1O00337 AC093909.1-201ENST00000504731 1122 ntBASIC15.75■□□□□ 0.11
SLC28A1O00337 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.75■□□□□ 0.11
SLC28A1O00337 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC15.75■□□□□ 0.11
SLC28A1O00337 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC15.75■□□□□ 0.11
SLC28A1O00337 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC15.75■□□□□ 0.11
SLC28A1O00337 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC15.75■□□□□ 0.11
SLC28A1O00337 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC15.75■□□□□ 0.11
SLC28A1O00337 RN7SL510P-201ENST00000581311 263 ntBASIC15.75■□□□□ 0.11
SLC28A1O00337 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
SLC28A1O00337 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC15.75■□□□□ 0.11
SLC28A1O00337 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms