Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.67■□□□□ 0.42
KRT39Q6A163 GPX1P2-201ENST00000429271 606 ntBASIC17.67■□□□□ 0.42
KRT39Q6A163 CEND1P1-201ENST00000451006 455 ntBASIC17.67■□□□□ 0.42
KRT39Q6A163 AC079140.1-201ENST00000508039 487 ntBASIC17.67■□□□□ 0.42
KRT39Q6A163 YBX1P5-201ENST00000509441 847 ntBASIC17.67■□□□□ 0.42
KRT39Q6A163 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.67■□□□□ 0.42
KRT39Q6A163 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC17.67■□□□□ 0.42
KRT39Q6A163 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC17.67■□□□□ 0.42
KRT39Q6A163 NKG7-205ENST00000600427 520 ntTSL 3 BASIC17.67■□□□□ 0.42
KRT39Q6A163 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.67■□□□□ 0.42
KRT39Q6A163 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
KRT39Q6A163 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC17.67■□□□□ 0.42
KRT39Q6A163 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
KRT39Q6A163 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
KRT39Q6A163 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
KRT39Q6A163 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
KRT39Q6A163 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
KRT39Q6A163 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
KRT39Q6A163 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
KRT39Q6A163 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.66■□□□□ 0.42
KRT39Q6A163 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
KRT39Q6A163 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC17.66■□□□□ 0.42
KRT39Q6A163 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
KRT39Q6A163 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
KRT39Q6A163 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
KRT39Q6A163 COA5-202ENST00000409997 557 ntTSL 4 BASIC17.66■□□□□ 0.42
KRT39Q6A163 SPCS2P4-201ENST00000436160 681 ntBASIC17.66■□□□□ 0.42
KRT39Q6A163 TIMM8BP1-201ENST00000452384 211 ntBASIC17.66■□□□□ 0.42
KRT39Q6A163 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.66■□□□□ 0.42
KRT39Q6A163 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC17.66■□□□□ 0.42
KRT39Q6A163 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
KRT39Q6A163 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.66■□□□□ 0.42
KRT39Q6A163 RNF34-208ENST00000555076 593 ntTSL 3 BASIC17.66■□□□□ 0.42
KRT39Q6A163 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC17.66■□□□□ 0.42
KRT39Q6A163 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.66■□□□□ 0.42
KRT39Q6A163 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.66■□□□□ 0.42
KRT39Q6A163 MIR3687-2-201ENST00000577708 61 ntBASIC17.66■□□□□ 0.42
KRT39Q6A163 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC17.66■□□□□ 0.42
KRT39Q6A163 AC010327.4-202ENST00000591484 748 ntBASIC17.66■□□□□ 0.42
KRT39Q6A163 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC17.66■□□□□ 0.42
KRT39Q6A163 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC17.66■□□□□ 0.42
KRT39Q6A163 AL365330.1-201ENST00000607459 531 ntBASIC17.66■□□□□ 0.42
KRT39Q6A163 MIR3687-1-201ENST00000614492 61 ntBASIC17.66■□□□□ 0.42
KRT39Q6A163 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
KRT39Q6A163 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
KRT39Q6A163 PCDHA1-201ENST00000378133 2726 ntBASIC17.66■□□□□ 0.42
KRT39Q6A163 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
KRT39Q6A163 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
KRT39Q6A163 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
KRT39Q6A163 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
KRT39Q6A163 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
KRT39Q6A163 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
KRT39Q6A163 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
KRT39Q6A163 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
KRT39Q6A163 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
KRT39Q6A163 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
KRT39Q6A163 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
KRT39Q6A163 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
KRT39Q6A163 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
KRT39Q6A163 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.66■□□□□ 0.42
KRT39Q6A163 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC17.65■□□□□ 0.42
KRT39Q6A163 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
KRT39Q6A163 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
KRT39Q6A163 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
KRT39Q6A163 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
KRT39Q6A163 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.65■□□□□ 0.42
KRT39Q6A163 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
KRT39Q6A163 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
KRT39Q6A163 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
KRT39Q6A163 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
KRT39Q6A163 PGR-209ENST00000617858 2816 ntTSL 5 BASIC17.65■□□□□ 0.42
KRT39Q6A163 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
KRT39Q6A163 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC17.65■□□□□ 0.42
KRT39Q6A163 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC17.65■□□□□ 0.42
KRT39Q6A163 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
KRT39Q6A163 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
KRT39Q6A163 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
KRT39Q6A163 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
KRT39Q6A163 RPSAP43-201ENST00000402237 625 ntBASIC17.65■□□□□ 0.42
KRT39Q6A163 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.65■□□□□ 0.42
KRT39Q6A163 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC17.65■□□□□ 0.42
KRT39Q6A163 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.65■□□□□ 0.42
KRT39Q6A163 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.65■□□□□ 0.42
KRT39Q6A163 AC112482.1-201ENST00000492080 688 ntBASIC17.65■□□□□ 0.42
KRT39Q6A163 AC098859.1-201ENST00000502915 1238 ntBASIC17.65■□□□□ 0.42
KRT39Q6A163 PUS1-205ENST00000535067 838 ntTSL 3 BASIC17.65■□□□□ 0.42
KRT39Q6A163 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
KRT39Q6A163 KRT8P23-201ENST00000560090 1207 ntBASIC17.65■□□□□ 0.42
KRT39Q6A163 LINC01225-203ENST00000563550 1244 ntBASIC17.65■□□□□ 0.42
KRT39Q6A163 MIR4469-201ENST00000583919 79 ntBASIC17.65■□□□□ 0.42
KRT39Q6A163 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.65■□□□□ 0.42
KRT39Q6A163 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.65■□□□□ 0.42
KRT39Q6A163 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC17.65■□□□□ 0.42
KRT39Q6A163 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
KRT39Q6A163 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
KRT39Q6A163 FOXO1B-201ENST00000504678 1527 ntBASIC17.65■□□□□ 0.42
KRT39Q6A163 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC17.65■□□□□ 0.42
KRT39Q6A163 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
KRT39Q6A163 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
KRT39Q6A163 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms