Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.16■□□□□ 0.18
SRP54P61011 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
SRP54P61011 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SRP54P61011 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
SRP54P61011 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.16■□□□□ 0.18
SRP54P61011 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SRP54P61011 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SRP54P61011 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SRP54P61011 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SRP54P61011 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.16■□□□□ 0.18
SRP54P61011 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SRP54P61011 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SRP54P61011 AC080080.1-201ENST00000625121 2420 ntBASIC16.16■□□□□ 0.18
SRP54P61011 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.16■□□□□ 0.18
SRP54P61011 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SRP54P61011 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
SRP54P61011 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SRP54P61011 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.16■□□□□ 0.18
SRP54P61011 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
SRP54P61011 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
SRP54P61011 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SRP54P61011 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SRP54P61011 AC105020.1-201ENST00000435356 2205 ntBASIC16.15■□□□□ 0.18
SRP54P61011 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SRP54P61011 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SRP54P61011 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.15■□□□□ 0.18
SRP54P61011 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SRP54P61011 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SRP54P61011 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SRP54P61011 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SRP54P61011 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SRP54P61011 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SRP54P61011 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SRP54P61011 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SRP54P61011 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SRP54P61011 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SRP54P61011 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC16.15■□□□□ 0.18
SRP54P61011 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.15■□□□□ 0.18
SRP54P61011 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SRP54P61011 AC093724.1-201ENST00000448659 1027 ntBASIC16.15■□□□□ 0.18
SRP54P61011 HLA-J-202ENST00000469281 1241 ntBASIC16.15■□□□□ 0.18
SRP54P61011 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
SRP54P61011 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SRP54P61011 AC027369.6-201ENST00000525520 931 ntBASIC16.15■□□□□ 0.18
SRP54P61011 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC16.15■□□□□ 0.18
SRP54P61011 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SRP54P61011 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SRP54P61011 AC073592.8-201ENST00000624126 511 ntBASIC16.15■□□□□ 0.18
SRP54P61011 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SRP54P61011 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SRP54P61011 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.15■□□□□ 0.18
SRP54P61011 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SRP54P61011 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SRP54P61011 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SRP54P61011 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SRP54P61011 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SRP54P61011 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
SRP54P61011 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SRP54P61011 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
SRP54P61011 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
SRP54P61011 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SRP54P61011 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SRP54P61011 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SRP54P61011 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SRP54P61011 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.14■□□□□ 0.17
SRP54P61011 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.14■□□□□ 0.17
SRP54P61011 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SRP54P61011 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SRP54P61011 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC16.14■□□□□ 0.17
SRP54P61011 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
SRP54P61011 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SRP54P61011 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SRP54P61011 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC16.14■□□□□ 0.17
SRP54P61011 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.14■□□□□ 0.17
SRP54P61011 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SRP54P61011 MAX-210ENST00000555419 765 ntTSL 5 BASIC16.14■□□□□ 0.17
SRP54P61011 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC16.14■□□□□ 0.17
SRP54P61011 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC16.14■□□□□ 0.17
SRP54P61011 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.14■□□□□ 0.17
SRP54P61011 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.14■□□□□ 0.17
SRP54P61011 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.14■□□□□ 0.17
SRP54P61011 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.14■□□□□ 0.17
SRP54P61011 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.14■□□□□ 0.17
SRP54P61011 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.14■□□□□ 0.17
SRP54P61011 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SRP54P61011 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.14■□□□□ 0.17
SRP54P61011 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.14■□□□□ 0.17
SRP54P61011 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
SRP54P61011 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SRP54P61011 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
SRP54P61011 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SRP54P61011 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SRP54P61011 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SRP54P61011 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.14■□□□□ 0.17
SRP54P61011 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SRP54P61011 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.14■□□□□ 0.17
SRP54P61011 AL162727.3-201ENST00000635661 2787 ntBASIC16.14■□□□□ 0.17
SRP54P61011 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
SRP54P61011 GGT4P-201ENST00000623672 1708 ntBASIC16.14■□□□□ 0.17
SRP54P61011 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms