Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 PMS2P7-201ENST00000506558 1336 ntBASIC17.53■□□□□ 0.4
SIX2Q9NPC8 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 HAUS4P1-201ENST00000406739 1145 ntBASIC17.53■□□□□ 0.4
SIX2Q9NPC8 AL355306.1-201ENST00000415580 579 ntBASIC17.53■□□□□ 0.4
SIX2Q9NPC8 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 AC245100.5-201ENST00000452108 331 ntBASIC17.53■□□□□ 0.4
SIX2Q9NPC8 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.53■□□□□ 0.4
SIX2Q9NPC8 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 AL365330.1-201ENST00000607459 531 ntBASIC17.53■□□□□ 0.4
SIX2Q9NPC8 CAND2-206ENST00000626378 333 ntTSL 5 BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SIX2Q9NPC8 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC17.52■□□□□ 0.4
SIX2Q9NPC8 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.52■□□□□ 0.4
SIX2Q9NPC8 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SIX2Q9NPC8 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SIX2Q9NPC8 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SIX2Q9NPC8 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
SIX2Q9NPC8 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SIX2Q9NPC8 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC17.52■□□□□ 0.4
SIX2Q9NPC8 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SIX2Q9NPC8 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SIX2Q9NPC8 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.4
SIX2Q9NPC8 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SIX2Q9NPC8 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
SIX2Q9NPC8 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC17.52■□□□□ 0.4
SIX2Q9NPC8 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.52■□□□□ 0.4
SIX2Q9NPC8 AL671883.3-201ENST00000603274 991 ntBASIC17.52■□□□□ 0.4
SIX2Q9NPC8 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SIX2Q9NPC8 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
SIX2Q9NPC8 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
SIX2Q9NPC8 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.52■□□□□ 0.39
SIX2Q9NPC8 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
SIX2Q9NPC8 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SIX2Q9NPC8 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
SIX2Q9NPC8 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC17.52■□□□□ 0.39
SIX2Q9NPC8 WARS-232ENST00000556645 2508 ntTSL 5 BASIC17.52■□□□□ 0.39
SIX2Q9NPC8 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SIX2Q9NPC8 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
SIX2Q9NPC8 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC17.52■□□□□ 0.39
SIX2Q9NPC8 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 MIR574-201ENST00000385209 96 ntBASIC17.51■□□□□ 0.39
SIX2Q9NPC8 IMP4-203ENST00000409935 958 ntTSL 5 BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 AL135744.1-201ENST00000565098 629 ntBASIC17.51■□□□□ 0.39
SIX2Q9NPC8 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC17.51■□□□□ 0.39
SIX2Q9NPC8 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SIX2Q9NPC8 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC17.5■□□□□ 0.39
SIX2Q9NPC8 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms