Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 FAM86C2P-203ENST00000528684 1004 ntBASIC12.68□□□□□ -0.38
CCDC140Q96MF4 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 AL138918.1-201ENST00000568306 659 ntBASIC12.68□□□□□ -0.38
CCDC140Q96MF4 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 HOTTIP_1.1-201ENST00000620415 57 ntBASIC12.68□□□□□ -0.38
CCDC140Q96MF4 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
CCDC140Q96MF4 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 CD82-202ENST00000342935 967 ntTSL 5 BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 BX842568.4-201ENST00000421222 227 ntBASIC12.67□□□□□ -0.38
CCDC140Q96MF4 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 RNF34-208ENST00000555076 593 ntTSL 3 BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 AC243562.1-201ENST00000560672 389 ntBASIC12.67□□□□□ -0.38
CCDC140Q96MF4 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 AC073389.1-201ENST00000595595 795 ntBASIC12.67□□□□□ -0.38
CCDC140Q96MF4 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 FHL2-212ENST00000607522 759 ntTSL 2 BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 AL589702.1-201ENST00000641229 1509 ntBASIC12.67□□□□□ -0.38
CCDC140Q96MF4 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC12.67□□□□□ -0.38
CCDC140Q96MF4 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC12.67□□□□□ -0.38
CCDC140Q96MF4 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 ELL2P1-201ENST00000413990 1906 ntBASIC12.66□□□□□ -0.38
CCDC140Q96MF4 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC12.66□□□□□ -0.38
CCDC140Q96MF4 SPDYE11-202ENST00000450699 704 ntBASIC12.66□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms