Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
YBX1P67809 ELL2P1-201ENST00000413990 1906 ntBASIC15.98■□□□□ 0.15
YBX1P67809 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
YBX1P67809 AC023824.1-201ENST00000562945 2975 ntBASIC15.98■□□□□ 0.15
YBX1P67809 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC15.98■□□□□ 0.15
YBX1P67809 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
YBX1P67809 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
YBX1P67809 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
YBX1P67809 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
YBX1P67809 AC002056.1-201ENST00000395613 760 ntBASIC15.98■□□□□ 0.15
YBX1P67809 AL355306.1-201ENST00000415580 579 ntBASIC15.98■□□□□ 0.15
YBX1P67809 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
YBX1P67809 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
YBX1P67809 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
YBX1P67809 CEND1P1-201ENST00000451006 455 ntBASIC15.98■□□□□ 0.15
YBX1P67809 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
YBX1P67809 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
YBX1P67809 YBX1P5-201ENST00000509441 847 ntBASIC15.98■□□□□ 0.15
YBX1P67809 KRT8P48-201ENST00000515599 1220 ntBASIC15.98■□□□□ 0.15
YBX1P67809 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.98■□□□□ 0.15
YBX1P67809 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.98■□□□□ 0.15
YBX1P67809 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
YBX1P67809 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.98■□□□□ 0.15
YBX1P67809 MIR3909-201ENST00000579518 119 ntBASIC15.98■□□□□ 0.15
YBX1P67809 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
YBX1P67809 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC15.98■□□□□ 0.15
YBX1P67809 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.98■□□□□ 0.15
YBX1P67809 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
YBX1P67809 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.98■□□□□ 0.15
YBX1P67809 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.98■□□□□ 0.15
YBX1P67809 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
YBX1P67809 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC15.98■□□□□ 0.15
YBX1P67809 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
YBX1P67809 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC15.97■□□□□ 0.15
YBX1P67809 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
YBX1P67809 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
YBX1P67809 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
YBX1P67809 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
YBX1P67809 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
YBX1P67809 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
YBX1P67809 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
YBX1P67809 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC15.97■□□□□ 0.15
YBX1P67809 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
YBX1P67809 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
YBX1P67809 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
YBX1P67809 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
YBX1P67809 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
YBX1P67809 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC15.97■□□□□ 0.15
YBX1P67809 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.97■□□□□ 0.15
YBX1P67809 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
YBX1P67809 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.97■□□□□ 0.15
YBX1P67809 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC15.97■□□□□ 0.15
YBX1P67809 COA5-202ENST00000409997 557 ntTSL 4 BASIC15.97■□□□□ 0.15
YBX1P67809 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC15.97■□□□□ 0.15
YBX1P67809 AL671277.1-201ENST00000429656 993 ntBASIC15.97■□□□□ 0.15
YBX1P67809 MKNK2P1-201ENST00000437526 628 ntBASIC15.97■□□□□ 0.15
YBX1P67809 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
YBX1P67809 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
YBX1P67809 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
YBX1P67809 PUS1-205ENST00000535067 838 ntTSL 3 BASIC15.97■□□□□ 0.15
YBX1P67809 AL138918.1-201ENST00000568306 659 ntBASIC15.97■□□□□ 0.15
YBX1P67809 MIR3687-2-201ENST00000577708 61 ntBASIC15.97■□□□□ 0.15
YBX1P67809 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC15.97■□□□□ 0.15
YBX1P67809 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC15.97■□□□□ 0.15
YBX1P67809 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
YBX1P67809 MIR3687-1-201ENST00000614492 61 ntBASIC15.97■□□□□ 0.15
YBX1P67809 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC15.97■□□□□ 0.15
YBX1P67809 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
YBX1P67809 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
YBX1P67809 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.97■□□□□ 0.15
YBX1P67809 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC15.97■□□□□ 0.15
YBX1P67809 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.97■□□□□ 0.15
YBX1P67809 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC15.97■□□□□ 0.15
YBX1P67809 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.97■□□□□ 0.15
YBX1P67809 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC15.97■□□□□ 0.15
YBX1P67809 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
YBX1P67809 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
YBX1P67809 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
YBX1P67809 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
YBX1P67809 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
YBX1P67809 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
YBX1P67809 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
YBX1P67809 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
YBX1P67809 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
YBX1P67809 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
YBX1P67809 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
YBX1P67809 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
YBX1P67809 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
YBX1P67809 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
YBX1P67809 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
YBX1P67809 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
YBX1P67809 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC15.96■□□□□ 0.15
YBX1P67809 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
YBX1P67809 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
YBX1P67809 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
YBX1P67809 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC15.96■□□□□ 0.15
YBX1P67809 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.96■□□□□ 0.15
YBX1P67809 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC15.96■□□□□ 0.15
YBX1P67809 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC15.96■□□□□ 0.15
YBX1P67809 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms