Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.24■□□□□ 0.35
BDNFP23560 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC17.23■□□□□ 0.35
BDNFP23560 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
BDNFP23560 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BDNFP23560 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.23■□□□□ 0.35
BDNFP23560 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BDNFP23560 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
BDNFP23560 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
BDNFP23560 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
BDNFP23560 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
BDNFP23560 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
BDNFP23560 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC17.23■□□□□ 0.35
BDNFP23560 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BDNFP23560 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
BDNFP23560 U82695.1-201ENST00000635752 1889 ntBASIC17.23■□□□□ 0.35
BDNFP23560 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BDNFP23560 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BDNFP23560 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
BDNFP23560 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
BDNFP23560 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
BDNFP23560 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
BDNFP23560 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BDNFP23560 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BDNFP23560 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BDNFP23560 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BDNFP23560 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC17.23■□□□□ 0.35
BDNFP23560 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC17.23■□□□□ 0.35
BDNFP23560 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC17.23■□□□□ 0.35
BDNFP23560 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.23■□□□□ 0.35
BDNFP23560 MTND6P24-201ENST00000440466 518 ntBASIC17.23■□□□□ 0.35
BDNFP23560 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC17.23■□□□□ 0.35
BDNFP23560 BCRP1-201ENST00000444246 691 ntBASIC17.23■□□□□ 0.35
BDNFP23560 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC17.23■□□□□ 0.35
BDNFP23560 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC17.23■□□□□ 0.35
BDNFP23560 SATB1-217ENST00000493952 626 ntTSL 3 BASIC17.23■□□□□ 0.35
BDNFP23560 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC17.23■□□□□ 0.35
BDNFP23560 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
BDNFP23560 AC105021.1-202ENST00000570572 669 ntBASIC17.23■□□□□ 0.35
BDNFP23560 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
BDNFP23560 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC17.23■□□□□ 0.35
BDNFP23560 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC17.23■□□□□ 0.35
BDNFP23560 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC17.23■□□□□ 0.35
BDNFP23560 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BDNFP23560 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.23■□□□□ 0.35
BDNFP23560 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BDNFP23560 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
BDNFP23560 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.23■□□□□ 0.35
BDNFP23560 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC17.23■□□□□ 0.35
BDNFP23560 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BDNFP23560 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
BDNFP23560 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BDNFP23560 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BDNFP23560 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
BDNFP23560 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC17.23■□□□□ 0.35
BDNFP23560 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
BDNFP23560 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC17.22■□□□□ 0.35
BDNFP23560 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
BDNFP23560 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.22■□□□□ 0.35
BDNFP23560 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC17.22■□□□□ 0.35
BDNFP23560 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
BDNFP23560 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
BDNFP23560 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.22■□□□□ 0.35
BDNFP23560 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BDNFP23560 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.22■□□□□ 0.35
BDNFP23560 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.22■□□□□ 0.35
BDNFP23560 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
BDNFP23560 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
BDNFP23560 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BDNFP23560 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC17.22■□□□□ 0.35
BDNFP23560 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
BDNFP23560 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BDNFP23560 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BDNFP23560 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BDNFP23560 BASP1P1-201ENST00000430708 665 ntBASIC17.22■□□□□ 0.35
BDNFP23560 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BDNFP23560 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
BDNFP23560 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
BDNFP23560 POU5F1P6-201ENST00000466990 990 ntBASIC17.22■□□□□ 0.35
BDNFP23560 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BDNFP23560 AQP6-203ENST00000551733 849 ntTSL 3 BASIC17.22■□□□□ 0.35
BDNFP23560 BANF1P1-201ENST00000553684 263 ntBASIC17.22■□□□□ 0.35
BDNFP23560 LITAF-210ENST00000571976 548 ntTSL 2 BASIC17.22■□□□□ 0.35
BDNFP23560 LITAF-214ENST00000574703 486 ntTSL 2 BASIC17.22■□□□□ 0.35
BDNFP23560 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC17.22■□□□□ 0.35
BDNFP23560 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BDNFP23560 AL096865.1-201ENST00000606796 927 ntBASIC17.22■□□□□ 0.35
BDNFP23560 RN7SL828P-201ENST00000607615 303 ntBASIC17.22■□□□□ 0.35
BDNFP23560 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
BDNFP23560 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
BDNFP23560 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC17.22■□□□□ 0.35
BDNFP23560 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC17.22■□□□□ 0.35
BDNFP23560 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BDNFP23560 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
BDNFP23560 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
BDNFP23560 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
BDNFP23560 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BDNFP23560 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
BDNFP23560 AC124067.4-201ENST00000519691 2379 ntBASIC17.22■□□□□ 0.35
BDNFP23560 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.22■□□□□ 0.35
BDNFP23560 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms