Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RNF40O75150 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
RNF40O75150 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.78■□□□□ 0.44
RNF40O75150 PKD1P5-201ENST00000532415 10291 ntBASIC17.78■□□□□ 0.44
RNF40O75150 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RNF40O75150 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
RNF40O75150 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.78■□□□□ 0.44
RNF40O75150 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
RNF40O75150 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RNF40O75150 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RNF40O75150 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RNF40O75150 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
RNF40O75150 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RNF40O75150 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC17.77■□□□□ 0.44
RNF40O75150 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC17.77■□□□□ 0.44
RNF40O75150 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC17.77■□□□□ 0.44
RNF40O75150 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RNF40O75150 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RNF40O75150 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RNF40O75150 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RNF40O75150 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RNF40O75150 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC17.77■□□□□ 0.44
RNF40O75150 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RNF40O75150 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
RNF40O75150 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.77■□□□□ 0.44
RNF40O75150 AC099063.4-201ENST00000641099 1602 ntBASIC17.77■□□□□ 0.44
RNF40O75150 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.77■□□□□ 0.44
RNF40O75150 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RNF40O75150 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC17.77■□□□□ 0.44
RNF40O75150 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RNF40O75150 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RNF40O75150 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RNF40O75150 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC17.77■□□□□ 0.44
RNF40O75150 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.77■□□□□ 0.44
RNF40O75150 CD63-210ENST00000550776 870 ntTSL 5 BASIC17.77■□□□□ 0.44
RNF40O75150 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC17.77■□□□□ 0.44
RNF40O75150 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RNF40O75150 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.77■□□□□ 0.44
RNF40O75150 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RNF40O75150 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC17.77■□□□□ 0.44
RNF40O75150 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
RNF40O75150 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
RNF40O75150 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
RNF40O75150 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
RNF40O75150 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.77■□□□□ 0.43
RNF40O75150 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC17.77■□□□□ 0.43
RNF40O75150 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
RNF40O75150 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
RNF40O75150 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
RNF40O75150 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
RNF40O75150 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
RNF40O75150 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RNF40O75150 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF40O75150 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF40O75150 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC17.76■□□□□ 0.43
RNF40O75150 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.76■□□□□ 0.43
RNF40O75150 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
RNF40O75150 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RNF40O75150 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC17.76■□□□□ 0.43
RNF40O75150 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF40O75150 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.76■□□□□ 0.43
RNF40O75150 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF40O75150 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RNF40O75150 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.76■□□□□ 0.43
RNF40O75150 IGLL3P-201ENST00000412472 434 ntBASIC17.76■□□□□ 0.43
RNF40O75150 CNN2P11-201ENST00000429351 262 ntBASIC17.76■□□□□ 0.43
RNF40O75150 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.76■□□□□ 0.43
RNF40O75150 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF40O75150 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC17.76■□□□□ 0.43
RNF40O75150 STK19B-204ENST00000512515 211 ntBASIC17.76■□□□□ 0.43
RNF40O75150 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC17.76■□□□□ 0.43
RNF40O75150 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.76■□□□□ 0.43
RNF40O75150 AC010654.1-201ENST00000615722 808 ntBASIC17.76■□□□□ 0.43
RNF40O75150 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC17.76■□□□□ 0.43
RNF40O75150 AL805961.1-202ENST00000641562 540 ntBASIC17.76■□□□□ 0.43
RNF40O75150 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
RNF40O75150 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF40O75150 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
RNF40O75150 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RNF40O75150 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RNF40O75150 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
RNF40O75150 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF40O75150 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF40O75150 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
RNF40O75150 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF40O75150 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF40O75150 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RNF40O75150 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
RNF40O75150 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RNF40O75150 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC17.75■□□□□ 0.43
RNF40O75150 HLA-A-202ENST00000376806 1854 ntBASIC17.75■□□□□ 0.43
RNF40O75150 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC17.75■□□□□ 0.43
RNF40O75150 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF40O75150 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RNF40O75150 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF40O75150 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF40O75150 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF40O75150 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF40O75150 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
RNF40O75150 ELL2P1-201ENST00000413990 1906 ntBASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms