Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
CXCL1P09341 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
CXCL1P09341 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
CXCL1P09341 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC12.78□□□□□ -0.36
CXCL1P09341 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
CXCL1P09341 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC12.78□□□□□ -0.36
CXCL1P09341 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
CXCL1P09341 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC12.78□□□□□ -0.36
CXCL1P09341 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC12.78□□□□□ -0.36
CXCL1P09341 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC12.78□□□□□ -0.36
CXCL1P09341 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
CXCL1P09341 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC12.78□□□□□ -0.36
CXCL1P09341 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC12.78□□□□□ -0.36
CXCL1P09341 AL158047.1-201ENST00000445918 881 ntBASIC12.78□□□□□ -0.36
CXCL1P09341 MTCL1P1-201ENST00000446207 792 ntBASIC12.78□□□□□ -0.36
CXCL1P09341 ECEL1P2-202ENST00000465689 757 ntBASIC12.78□□□□□ -0.36
CXCL1P09341 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
CXCL1P09341 RPS20-210ENST00000523936 899 ntTSL 2 BASIC12.78□□□□□ -0.36
CXCL1P09341 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC12.78□□□□□ -0.36
CXCL1P09341 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC12.78□□□□□ -0.36
CXCL1P09341 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
CXCL1P09341 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC12.78□□□□□ -0.36
CXCL1P09341 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
CXCL1P09341 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
CXCL1P09341 Z99916.2-201ENST00000604037 246 ntBASIC12.78□□□□□ -0.36
CXCL1P09341 FAM87A-204ENST00000613235 858 ntBASIC12.78□□□□□ -0.36
CXCL1P09341 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
CXCL1P09341 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC12.78□□□□□ -0.36
CXCL1P09341 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC12.78□□□□□ -0.36
CXCL1P09341 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 TUBB8P12-201ENST00000308911 1335 ntBASIC12.78□□□□□ -0.36
CXCL1P09341 TUBB7P-202ENST00000428444 1305 ntBASIC12.78□□□□□ -0.36
CXCL1P09341 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC12.78□□□□□ -0.36
CXCL1P09341 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 TUBB8P7-204ENST00000567960 1332 ntBASIC12.78□□□□□ -0.36
CXCL1P09341 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
CXCL1P09341 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 AL671710.1-201ENST00000610245 2349 ntBASIC12.78□□□□□ -0.36
CXCL1P09341 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC12.78□□□□□ -0.36
CXCL1P09341 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC12.78□□□□□ -0.36
CXCL1P09341 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
CXCL1P09341 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
CXCL1P09341 AC091951.1-201ENST00000512854 2465 ntBASIC12.78□□□□□ -0.36
CXCL1P09341 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CXCL1P09341 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
CXCL1P09341 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC12.77□□□□□ -0.36
CXCL1P09341 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
CXCL1P09341 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC12.77□□□□□ -0.36
CXCL1P09341 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
CXCL1P09341 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
CXCL1P09341 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
CXCL1P09341 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.36
CXCL1P09341 AC013726.1-201ENST00000563747 2285 ntBASIC12.77□□□□□ -0.36
CXCL1P09341 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
CXCL1P09341 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
CXCL1P09341 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC12.77□□□□□ -0.36
CXCL1P09341 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
CXCL1P09341 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.36
CXCL1P09341 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
CXCL1P09341 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
CXCL1P09341 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
CXCL1P09341 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CXCL1P09341 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
CXCL1P09341 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC12.77□□□□□ -0.37
CXCL1P09341 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
CXCL1P09341 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CXCL1P09341 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CXCL1P09341 INGX-201ENST00000359239 846 ntBASIC12.77□□□□□ -0.37
CXCL1P09341 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC12.77□□□□□ -0.37
CXCL1P09341 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC12.77□□□□□ -0.37
CXCL1P09341 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC12.77□□□□□ -0.37
CXCL1P09341 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC12.77□□□□□ -0.37
CXCL1P09341 NAPSB-206ENST00000562112 1266 ntBASIC12.77□□□□□ -0.37
CXCL1P09341 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC12.77□□□□□ -0.37
CXCL1P09341 NAA38-203ENST00000575071 553 ntTSL 2 BASIC12.77□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms