Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
CDKL5O76039 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDKL5O76039 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CDKL5O76039 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC19.09■□□□□ 0.65
CDKL5O76039 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CDKL5O76039 NMU-202ENST00000505262 693 ntTSL 3 BASIC19.09■□□□□ 0.65
CDKL5O76039 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC19.09■□□□□ 0.65
CDKL5O76039 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDKL5O76039 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CDKL5O76039 RARRES2P8-201ENST00000566335 367 ntBASIC19.09■□□□□ 0.65
CDKL5O76039 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC19.09■□□□□ 0.65
CDKL5O76039 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
CDKL5O76039 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDKL5O76039 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDKL5O76039 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
CDKL5O76039 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC19.09■□□□□ 0.65
CDKL5O76039 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDKL5O76039 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDKL5O76039 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDKL5O76039 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC19.09■□□□□ 0.65
CDKL5O76039 AC073439.1-201ENST00000624121 1774 ntBASIC19.09■□□□□ 0.65
CDKL5O76039 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDKL5O76039 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CDKL5O76039 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC19.09■□□□□ 0.65
CDKL5O76039 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC19.08■□□□□ 0.65
CDKL5O76039 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
CDKL5O76039 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
CDKL5O76039 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CDKL5O76039 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC19.08■□□□□ 0.65
CDKL5O76039 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CDKL5O76039 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
CDKL5O76039 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
CDKL5O76039 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CDKL5O76039 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CDKL5O76039 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
CDKL5O76039 MIR574-201ENST00000385209 96 ntBASIC19.08■□□□□ 0.64
CDKL5O76039 AC023274.1-201ENST00000418278 595 ntBASIC19.08■□□□□ 0.64
CDKL5O76039 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CDKL5O76039 PRYP6-201ENST00000514804 343 ntBASIC19.08■□□□□ 0.64
CDKL5O76039 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC19.08■□□□□ 0.64
CDKL5O76039 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC19.08■□□□□ 0.64
CDKL5O76039 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC19.08■□□□□ 0.64
CDKL5O76039 AC099522.2-201ENST00000607001 744 ntBASIC19.08■□□□□ 0.64
CDKL5O76039 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CDKL5O76039 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CDKL5O76039 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
CDKL5O76039 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
CDKL5O76039 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CDKL5O76039 FER1L4-210ENST00000615531 5998 ntBASIC19.08■□□□□ 0.64
CDKL5O76039 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CDKL5O76039 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CDKL5O76039 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CDKL5O76039 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC19.08■□□□□ 0.64
CDKL5O76039 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
CDKL5O76039 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CDKL5O76039 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CDKL5O76039 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CDKL5O76039 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC19.08■□□□□ 0.64
CDKL5O76039 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CDKL5O76039 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
CDKL5O76039 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CDKL5O76039 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CDKL5O76039 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
CDKL5O76039 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDKL5O76039 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDKL5O76039 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC19.07■□□□□ 0.64
CDKL5O76039 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDKL5O76039 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC19.07■□□□□ 0.64
CDKL5O76039 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDKL5O76039 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDKL5O76039 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC19.07■□□□□ 0.64
CDKL5O76039 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CDKL5O76039 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CDKL5O76039 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC19.07■□□□□ 0.64
CDKL5O76039 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDKL5O76039 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
CDKL5O76039 IMP4-203ENST00000409935 958 ntTSL 5 BASIC19.07■□□□□ 0.64
CDKL5O76039 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC19.07■□□□□ 0.64
CDKL5O76039 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CDKL5O76039 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CDKL5O76039 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDKL5O76039 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC19.07■□□□□ 0.64
CDKL5O76039 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC19.07■□□□□ 0.64
CDKL5O76039 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CDKL5O76039 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDKL5O76039 AC091812.2-201ENST00000619081 385 ntBASIC19.07■□□□□ 0.64
CDKL5O76039 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC19.07■□□□□ 0.64
CDKL5O76039 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDKL5O76039 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
CDKL5O76039 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
CDKL5O76039 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDKL5O76039 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDKL5O76039 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDKL5O76039 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CDKL5O76039 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
CDKL5O76039 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC19.07■□□□□ 0.64
CDKL5O76039 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
CDKL5O76039 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CDKL5O76039 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CDKL5O76039 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms