Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 AC093724.1-201ENST00000448659 1027 ntBASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 QPRT-203ENST00000562473 579 ntTSL 3 BASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 AC092902.6-201ENST00000641783 218 ntBASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 AC073439.1-201ENST00000624121 1774 ntBASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 AL513523.2-202ENST00000427283 2040 ntBASIC17.06■□□□□ 0.32
AP4E1Q9UPM8 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 AL355306.1-201ENST00000415580 579 ntBASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 U82695.1-201ENST00000635752 1889 ntBASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
AP4E1Q9UPM8 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 YBX2P1-201ENST00000394192 760 ntBASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 MTDHP5-201ENST00000598980 586 ntBASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 AL592424.1-201ENST00000563624 1536 ntBASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
AP4E1Q9UPM8 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms